BioCompute
BioCompute supports the IEEE 2791-2020 standard for bioinformatics pipelines/workflows in the High-Throughput Sequencing (HTS) space.
Washington, D.C.
Pinned Repositories
bco-app
BCO App by Seven Bridges
bco-ro-crate
Tutorial and specification for packaging IEEE 2791-2020 BCOs as RO-Crate Research Objects
bco-ro-example-chipseq
Packaging a IEEE 2791 described BioCompute Object as RO-Crate, using nf-core/chipseq as example
bco_api
The master repository for the JSON API.
BCO_Documentation
Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
BCO_Spec_V1.0
BioCompute Object (BCO) project is a collaborative and community-driven framework to standardize HTS computational data. 1. BCO Specification Document - user manual for understanding and creating BCOs - https://tinyurl.com/bco-spec 2. HTS-CSRS project website - https://hive.biochemistry.gwu.edu/htscsrs/ 3. Open Science Framework - https://osf.io/h59uh/[ResearchObject](http://www.researchobject.org/)
examples
repo for BCO example flat files
galaxy
Data intensive science for everyone.
portal
BCO Portal rebuild.
portal_userdb
BioCompute's Repositories
biocompute-objects/BCO_Documentation
Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
biocompute-objects/bco-ro-example-chipseq
Packaging a IEEE 2791 described BioCompute Object as RO-Crate, using nf-core/chipseq as example
biocompute-objects/portal
BCO Portal rebuild.
biocompute-objects/bco_api
The master repository for the JSON API.
biocompute-objects/bco_editor
A web application that can be used to create and edit BioCompute objects based on BioCompute schema described in the BCO specification document.
biocompute-objects/bcotool
biocompute-objects/galaxy
Data intensive science for everyone.
biocompute-objects/bco-app
BCO App by Seven Bridges
biocompute-objects/biocompute-object-llm
BioCompute Object Assistant
biocompute-objects/examples
repo for BCO example flat files
biocompute-objects/portal_userdb
biocompute-objects/userdb
biocompute-objects/bco-rag
BioCompute Object Retrieval-Augmented Generation Tool
biocompute-objects/bco-ro-crate
Tutorial and specification for packaging IEEE 2791-2020 BCOs as RO-Crate Research Objects
biocompute-objects/bco2markdown
Code for converting a BCO to a Markdown file
biocompute-objects/linked-data-hub
Linked Data Hub Schema and Script
biocompute-objects/Mockup
biocompute-objects/pdf_to_bco_script
A preliminary script for converting pdfs into biocompute objects. Accuracy varies from section to section.
biocompute-objects/playbook-partnership
A repository for playbook partnership collaboration.
biocompute-objects/-Tool-Type-Dictionary
biocompute-objects/bco-public-website
A Hugo-based deployment of biocomputeobject.org
biocompute-objects/biocompute
Create and Manipulate BioCompute Objects
biocompute-objects/biocompute-objects.github.io
Website redirection
biocompute-objects/BioComputeObjectCreatorCommandLineTool
biocompute-objects/dnanexus
biocompute-objects/extension_domain
extension schema for BCO
biocompute-objects/galaxy_server
Configuration for Galaxy Installation with Ansible in AWS for the BioCompute Project
biocompute-objects/library
Standard library to support the IEEE 2791-2020 standard.
biocompute-objects/RVDB-curation
This wrapper enables the HPC execution of FDA DB curation and list all the step in a programming language style.
biocompute-objects/w3id.org
Website source code for w3id.org