Define New Extension Domain Schema

[kee007ney]

Need to convert BCO data into Linked Data Hub format for users of LDH.

1. Define a schema to represent BCO data
   • Use https://ldh.clinicalgenome.org/ldh/ui/api-docs to find the relevant fields
   • Map fields from BCO to fields in LDH
   • Find a "catch all" field for BCO fields that don't map well (BCO is for workflows and LDH is for data, so there will be many)
2. Write a conversion script that will take BCO data and convert it into LDH-ready format
   • This may be hosted as an API endpoint on the BioCompute server so data can be requested programmatically

This is part of the CFDE project.

[HadleyKing]

https://github.com/biocompute-objects/extension_domain

[ChinweokeO]

@HadleyKing to review example BCO, and @tiwa1154 to add exemplar BCOs.

[kee007ney]

@NiramishCuisine Can you please add your linked data hub schema and example file to the repo?

[kee007ney]

Continuation plan in case I'm gone. Once we have the schema and the example BCO:

• Host publicly accessible schema on server
• Add example BCO to Portal
• Add documentation to Wiki for both
• Submit to Jeet for review

[kee007ney]

@HadleyKing

Schema file is here:
https://github.com/biocompute-objects/linked-data-hub/blob/master/linked-data-hub-schema.json

Example file is here:
https://github.com/biocompute-objects/linked-data-hub/blob/master/result.json

This is what we need.