BioExcel Building Blocks Workflows

Welcome to the global repository for all the BioExcel Building Blocks Workflows. In this repository, there are all the versions for each workflow manager:

Common Workflow Language (CWL)
Galaxy
Jupyter Notebooks
Pure Python
Docker

Installation

Please note that all the Jupyter Notebook versions are loaded as submodules as all of them have their own repository, so the process of cloning this project is slightly different than the common one:

git clone --recursive https://github.com/bioexcel/biobb_workflows.git
cd biobb_workflows
git submodule update --init --recursive

After cloning, to update to the latest Jupyter Notebook release, just execute:

git submodule update --remote

Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).

Licensed under the Apache License 2.0, see the file LICENSE for details.