Pinned Repositories
alphafold
Open source code for AlphaFold.
aqmm
Absolute quantification of metagenome and metatranscriptome
FastANI
Fast Whole-Genome Similarity (ANI) Estimation
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
MetaP
Metagenomics profiling is a Perl package for 16S rRNA gene, metagenomics and metatranscriptomics analysis package
microbiome_singularity_version
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
pavian
🌈 Interactive analysis of metagenomics data
Two-Stage-Clustering-TSC
This C++ program is used to cluster 16S rRNA sequences into clusters (OTUs)
Ublastx_stageone
This is the source code for multisamples ARGs profiling using SARG2.0 database
biofuture's Repositories
biofuture/Ublastx_stageone
This is the source code for multisamples ARGs profiling using SARG2.0 database
biofuture/aqmm
Absolute quantification of metagenome and metatranscriptome
biofuture/microbiome_singularity_version
biofuture/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
biofuture/FastANI
Fast Whole-Genome Similarity (ANI) Estimation
biofuture/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
biofuture/pavian
🌈 Interactive analysis of metagenomics data
biofuture/alphafold
Open source code for AlphaFold.
biofuture/AutoDock-Vina
AutoDock Vina
biofuture/awesome-multi-omics
List of software packages for multi-omics analysis
biofuture/BEEM
BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data
biofuture/CAT
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
biofuture/centrifuge
Classifier for metagenomic sequences
biofuture/conda-docs
Conda documentation
biofuture/ggvenn
Venn Diagram by ggplot2
biofuture/H.pylori_resistome
This is the R code for H.pylori eradication resistome
biofuture/jiangxiaotao.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes Use this template to show the academical information
biofuture/Krona
Interactively explore metagenomes and more from a web browser.
biofuture/macrel
Predict AMPs in (meta)genomes and peptides
biofuture/mag
Assembly and binning of metagenomes
biofuture/micom
Python package to study microbial communities using metabolic modeling.
biofuture/MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
biofuture/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
biofuture/omixer-rpm
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
biofuture/Rarefaction
Rarefaction scripts
biofuture/restracker
This is the bioinformatic tool to accurately tracking the host of antimicrobial resistance genes in metagenomic sequences
biofuture/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
biofuture/sepath_tool_UEA
SEPATH template pipelines optimised for UEA high performance computing cluster
biofuture/sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
biofuture/YouCompleteMe
A code-completion engine for Vim