biogeeker

biogeeker's Stars

• cxasm/notepad--

  一个支持windows/linux/mac的文本编辑器，目标是做**人自己的编辑器，来自**。

  Language:C++5.2k201

• ZiyaoLi/AlphaFold3

  To become an implementation of AlphaFold3 based on Uni-Fold.

  Language:Python191

• eternagame/EternaFold

  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

  Language:C++4710

• JushBJJ/Mr.-Ranedeer-AI-Tutor

  A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.

  28.2k3.2k

• ChaoXu1997/RNAseqTool

  A Shiny App for Interactive RNAseq Analysis and Visualization

  Language:R101

• moshi4/pyGenomeViz

  A genome visualization python package for comparative genomics

  Language:Python25521

• csoderlund/SyMAP

  Synteny Mapping and Analysis Program

  Language:Java257

• brettc/partitionfinder

  PartitionFinder discovers optimal partitioning schemes for DNA sequences.

  Language:Python6042

• syt2/zotero-addons

  Install add-ons directly in Zotero | Zotero Add-on Market | Zotero插件市场

  Language:TypeScript4689

• nadavbra/protein_bert

  Language:Jupyter Notebook46297

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.2k2.2k

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.6k489

• agemagician/ProtTrans

  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

  Language:Jupyter Notebook1.1k151

• UCLOrengoGroup/cath-tools

  Protein structure comparison tools such as SSAP and SNAP

  Language:C++5614

• veg/hyphy

  HyPhy: Hypothesis testing using Phylogenies

  Language:HyPhy20168

• normandavey/AlphaFold2-IDR-complex-prediction

  378

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python45044

• verilylifesciences/genomewarp

  GenomeWarp translates genetic variants from one genome assembly version to another.

  Language:Java9720

• DyogenIBENS/Agora

  Algorithm For Gene Order Reconstruction in Ancestors

  Language:Python6914

• HeliXonProtein/OmegaFold

  OmegaFold Release Code

  Language:Python53576

• biogeeker/qvina

  Accurately speed up AutoDock Vina

  1

• Longhui-Ren/Ancestral_Genome_Reconstruction

  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO

  Language:Perl1310

• sculab/RASP

  Reconstruct Ancestral State in Phylogenies

  Language:Visual Basic .NET135

• Adamtaranto/TIRmite

  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

  Language:Python53

• computational-genomics-lab/scripts-for-SSR-project

  Language:Shell21

• biogeeker/scripts-for-SSR-project

  128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution

  1

• biogeeker/DupGen_finder

  A pipeline used to identify different modes of duplicated gene pairs

  1

• qiao-xin/DupGen_finder

  A pipeline used to identify different modes of duplicated gene pairs

  Language:C++8729

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python50868

• sagnikbanerjee15/Finder

  A fully automated gene annotator from RNA-Seq expression data

  Language:Python5114