PorousMediaLab

The toolbox for batch and 1D reactive transport modelling in porous media aimed at the easiness of use for the user without computational background.

How to use

Have a look at "examples" folder.

Installation using pip

Install python version 3.5 or higher (click);
install Anaconda (click);
to install the toolbox run pip install porousmedialab
in terminal run command jupyter notebook;
You will see the folders in your home folder. You can navigate in any folder and create a new notebook with your model.

Manual installation

Install python version 3.5 or higher (click);
install Anaconda (click);
download and unzip or clone (using git) this repository (PorousMediaLab);
Open terminal and go to the PorousMediaLab folder using cd command. If you have problems with the terminal, check this guide;
in terminal run command jupyter notebook;
you will see the folders of the PorousMediaLab project; you can go in "examples" folder and play with them.

Citation

Igor Markelov (2020). Modelling Biogeochemical Cycles Across Scales: From Whole-Lake Phosphorus Dynamics to Microbial Reaction Systems. UWSpace. http://hdl.handle.net/10012/15513

Contribution

I am looking for contributors specifically for incorporation of:

parallelization
sensitivity tests
unsaturated flow
thermodynamic calculations
your crazy ideas and needs

If you wish to contribute in this open source project, please, create pull request or conact me via email: is.markelov@gmail.com.

Acknowledgements

This project was funded by

Lakes in Transition (Research Council of Norway project no. 244558/E50 (https://prosjektbanken.forskningsradet.no/#/project/NFR/244558)
the Canada Excellence Research Chair in Ecohydrology (https://www.cerc.gc.ca/chairholders-titulaires/former-ancien-eng.aspx).

MIT License

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

biogeochemistry/PorousMediaLab