bioimagehuji

Pinned Repositories

bacteria_distance
Find distances from bacteria to nuclei in QuPath
Language:Groovy00
brightfield_segment23
Segment bright field live cells with ImageJ
Language:ImageJ Macro00
cell_intensity_ij
Language:ImageJ Macro00
coloc_dir_ij
Colocalization of all images in directory
Language:ImageJ Macro00
foci_colocalization
Foci colocalization
Language:Groovy00
frame_extractor
Extracting frames from a video with specified time interval in seconds
Language:Jupyter Notebook00
growth_curve_outcomes
Growth curve outcomes
Language:Python00
microglia_segment23
Microglia Segmentation 2023
Language:Python00
qp_membrane
Measure intensities in cell, membrane and cytoplasm
Language:Groovy00
qupath_scripts
Language:Groovy00

bioimagehuji's Repositories

bioimagehuji/bacteria_distance
Find distances from bacteria to nuclei in QuPath
Language:Groovy00
bioimagehuji/brightfield_segment23
Segment bright field live cells with ImageJ
Language:ImageJ Macro00
bioimagehuji/cell_intensity_ij
Language:ImageJ Macro00
bioimagehuji/coloc_dir_ij
Colocalization of all images in directory
Language:ImageJ Macro00
bioimagehuji/foci_colocalization
Foci colocalization
Language:Groovy00
bioimagehuji/frame_extractor
Extracting frames from a video with specified time interval in seconds
Language:Jupyter Notebook00
bioimagehuji/growth_curve_outcomes
Growth curve outcomes
Language:Python00
bioimagehuji/microglia_segment23
Microglia Segmentation 2023
Language:Python00
bioimagehuji/qp_membrane
Measure intensities in cell, membrane and cytoplasm
Language:Groovy00
bioimagehuji/qupath_scripts
Language:Groovy00
bioimagehuji/malaria
Language:Jupyter Notebook