bioinfo-chru-strasbourg/howard

Issues

• SpliceAI

  #337 opened 7 days ago
  0

• Intergenic variant

  #336 opened 7 days ago
  0

• Explode info fields too permissive

  #335 opened 6 days ago
  2

• Incorrect tag for HOWARD v0.12.0

  #331 opened 9 days ago
  1

• BED annotation with parquet method generate not ordered annotation values when regions overlap

  #325 opened 6 days ago
  1

• Export fail when empty

  #324 opened 6 days ago
  1

• Error when a sample contains a special character

  #321 opened 6 days ago
  1

• Improve NOMEN calculation

  #315 opened 6 days ago
  1

• Add a step to rename INFO/tags

  #307 opened 6 days ago
  1

• Use YAML instead of JSON

  #304 opened a month ago
  1

• Fix the missing info fields for bigwig annotation

  #298 opened 2 months ago
  1

• Add BigWig annotation

  #295 opened 2 months ago
  1

• CADD annotations from offline model (docker + snakemake)

  #294 opened 2 months ago
  0

• Match between Ensembl / Refseq transcript during prioritization step

  #274 opened 3 months ago
  1

• Export only prioritize transcript annotation

  #273 opened 3 months ago
  2

• Error in prioritization step

  #272 opened 7 days ago
  1

• Query tool - disable output print

  #270 opened 4 months ago
  1

• Improve type for dbNSFP

  #268 opened 4 months ago
  2

• Annotation file not found

  #266 opened 3 months ago
  1

• Add prioritization in SQL format

  #265 opened 4 months ago
  2

• Manage sample columns in input file

  #263 opened 4 months ago
  2

• Sample columns disappear

  #261 opened 4 months ago
  1

• GA4GH compatibility

  #258 opened 4 months ago
  0

• Add transcripts level

  #256 opened 7 days ago
  11

• Add uniquify option for dbNSFP database generation

  #254 opened 5 months ago
  1

• howard convert error

  #246 opened 4 months ago
  1

• Auto remove snpEff databases list when empty

  #244 opened 6 months ago
  2

• Not able to download databases

  #240 opened 5 months ago
  8

• Omim annotation issue : gene list not sorted

  #239 opened 6 days ago
  2

• Potential Python Version Dependency Issue (Resolved)

  #238 opened 6 months ago
  2

• Add quick annotation for each specific tool/method

  #234 opened 5 months ago
  1

• Add snpSift annotation tool

  #233 opened 5 months ago
  1

• Error while exporting variant into vcf

  #231 opened 8 months ago
  2

• Add barcode on genotype for a family

  #229 opened 8 months ago
  1

• Clean annotation parquet

  #227 opened 8 months ago
  1

• Clean SonarLint issues

  #226 opened 8 months ago
  0

• Fix from_annovar with wrong header calculation

  #224 opened 8 months ago
  1

• Remove export header when output format is VCF

  #221 opened 8 months ago
  1

• Fix parquet partition option

  #219 opened 8 months ago
  1

• Error when VCF sort for huge file

  #218 opened 8 months ago
  1

• Ensure VCF columns are samples with well formed genotype

  #216 opened 8 months ago
  1

• Fix bad header error not shown

  #215 opened 8 months ago
  1

• Add plugins module

  #207 opened 9 months ago
  1

• Function to read transcripts file

  #202 opened 9 months ago
  1

• Update exomiser 14.0.0

  #195 opened 9 months ago
  1

• Add docker for external tools

  #193 opened 9 months ago
  1

• Add splice annotation

  #192 opened 5 months ago
  1

• Add Gene annotation database generation

  #190 opened 5 months ago
  1

• Check bcftools Matching records

  #187 opened 9 months ago
  1

• Add HGVS annotation to process tool

  #176 opened 9 months ago
  1