bioinfoDZ
A computational genomics and bioinformatics group at Albert Einstein College of Medicine
Albert Einstein College of MedicineBronx, NY, USA
Pinned Repositories
22q11wgs
Scripts for analysis of 22q11.2 whole genome sequencing data
ASDCCC
Scripts for Cell-Cell Communication Analysis
GBMCAF
Codes for identifying and characterizing CAFs in gliomas
HSMotifDiscover
The HS sequences are diffrent from DNA, RNA and protein sequences in a few ways. So, the Gibbs-Sampling algorithm has been implemented in such a way, it can discover motifs in the heparan sulphate (HS) sequences.
HSMotifDiscover_ShinyApp
Discover motif in Heparan Sulphate (HS) sequences or any type of sequnces.
OS_TKODKObulk
panCAF
Codes for analyzing heterogeneity of cancer-associated fibroblasts in multiple cancers
RISC
A R package for integrated scRNA-seq data analysis using the RPCI algorithm
scDAPP
A end-to-end scRNA-seq analysis pipeline for cross-group comparison
Stereo3D
Visualization in three-dimensional (3D) space is a standard and critical process for examining the complex structure of high dimensional data. Stereo imaging technology can be adopted to enhance 3D representation of any complex data, especially those consisting mostly of points and lines. We illustrate the simple steps that are involved and strongly encourage others to implement it in their own visualization software. To facilitate its application, we have also created a new software that can convert a regular 3D scatterplot or network figure to a stereo image
bioinfoDZ's Repositories
bioinfoDZ/RISC
A R package for integrated scRNA-seq data analysis using the RPCI algorithm
bioinfoDZ/scDAPP
A end-to-end scRNA-seq analysis pipeline for cross-group comparison
bioinfoDZ/panCAF
Codes for analyzing heterogeneity of cancer-associated fibroblasts in multiple cancers
bioinfoDZ/HSMotifDiscover
The HS sequences are diffrent from DNA, RNA and protein sequences in a few ways. So, the Gibbs-Sampling algorithm has been implemented in such a way, it can discover motifs in the heparan sulphate (HS) sequences.
bioinfoDZ/Stereo3D
Visualization in three-dimensional (3D) space is a standard and critical process for examining the complex structure of high dimensional data. Stereo imaging technology can be adopted to enhance 3D representation of any complex data, especially those consisting mostly of points and lines. We illustrate the simple steps that are involved and strongly encourage others to implement it in their own visualization software. To facilitate its application, we have also created a new software that can convert a regular 3D scatterplot or network figure to a stereo image
bioinfoDZ/ASDCCC
Scripts for Cell-Cell Communication Analysis
bioinfoDZ/metacell_based_DEA
Using SEACells to generate metacells and used as metareplicates for differential gene expression analysis.
bioinfoDZ/OS_TKODKObulk
bioinfoDZ/22q11wgs
Scripts for analysis of 22q11.2 whole genome sequencing data
bioinfoDZ/GBMCAF
Codes for identifying and characterizing CAFs in gliomas
bioinfoDZ/HSMotifDiscover_ShinyApp
Discover motif in Heparan Sulphate (HS) sequences or any type of sequnces.
bioinfoDZ/SMARTcleaner
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis