LaboBioInfoUQÀM

Canadian-cropland-dataset-github

This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.

Caribou

Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning

CASTOR_KRFE

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

evoVGM

Evolutionary-based Variational Generative Model using Multiple Sequence Alignments

fungalbgcdata

KEVOLVE

Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold

mirLibSpark

microRNA validation using Spark framework

RL-bgc-components

Reinforcement learning for improving components in fungal BGCs

tgowler

TGROWLeR system abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.

TOUCAN

Supervised learning for fungal BGC discovery

bioinfoUQAM/Canadian-cropland-dataset-github

This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.

bioinfoUQAM/CASTOR_KRFE

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

bioinfoUQAM/fungalbgcdata

bioinfoUQAM/TOUCAN

Supervised learning for fungal BGC discovery

bioinfoUQAM/RL-bgc-components

Reinforcement learning for improving components in fungal BGCs

bioinfoUQAM/Caribou

Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning

bioinfoUQAM/KEVOLVE

Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold

bioinfoUQAM/mirLibSpark

microRNA validation using Spark framework

bioinfoUQAM/tgowler

TGROWLeR system abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.

bioinfoUQAM/CASTOR_KRFE_v1.0

[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE

bioinfoUQAM/evoVGM

Evolutionary-based Variational Generative Model using Multiple Sequence Alignments

bioinfoUQAM/LAAMS

Supervised learning for Lactanet Automatic Milking Systems (AMS) data

bioinfoUQAM/RECOMB-CG-2019_supp

Supporting data RECOMB-CG 2019

bioinfoUQAM/slm_kgenomvir

Evaluation of Statistical Linear Models for Genome Virus Classification

bioinfoUQAM/WGS_Pipeline

Pipeline for analysis of DNA-seq on Compute Canada HPC servers.

bioinfoUQAM/datasets_for_ML

A list of projects and datasets for practicing machine learning (ML).

bioinfoUQAM/Nucleotide-sequence-metadata-downloader

Python script to download metadata associated with nucleotide sequences. The script takes as input a sequence file in fasta format where the id corresponds to the accession number of each sequence. It gives as output a file in excel format containing the different metadata related to the sequences available from the genbank database.

bioinfoUQAM/cohesion_index

Computing clustering indices: Silhouette, Cohesion, Calinski et Dunn

bioinfoUQAM/dna_fun

Printing a fasta file in the form of double stranded DNA

bioinfoUQAM/evoVGM_Exp

bioinfoUQAM/longranger_templates

longranger cluster templates

bioinfoUQAM/method

Method developed

bioinfoUQAM/methylc-seq

bioinfoUQAM/ORF-finder

This script take as input a fasta file and identify all open reading frames for each sequence

bioinfoUQAM/RNA_seq_pipeline

bioinfoUQAM/the-canadian-cropland-dataset-website

bioinfoUQAM/w4CSeq

web server of 4C-Seq data analysis pipeline

bioinfoUQAM/Welfare_AI

bioinfoUQAM/welfare_ai_2.0