Bioinformatics Lab, De La Salle University, Manila

.github

attack_amr

Source code for analysis of hospital wastewater metagenomic data

attack_amr_pipeline

Bioinformatics pipeline for profiling anti-microbial resistance genes from hospital wastewater

bioinfodlsu-survival-guide

Collection of reference material for FAQ from members/applicants of Bioinformatics Lab, DLSU Manila

bioinfodlsu.github.io

Website of the Bioinformatics Lab at DLSU Manila

phage-host-prediction

Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences

PHIStruct

Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages

rice-pilaf

Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

samar

Samar is a pipeline for speedy, assembly-free differential gene expression analysis in non-model organisms.

samar_lite

Quick-and-dirty differential gene expression analysis pipeline that avoids computationally demanding de-novo transcriptome assembly

bioinfodlsu/phage-host-prediction

Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences

bioinfodlsu/PHIStruct

Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages

bioinfodlsu/attack_amr

Source code for analysis of hospital wastewater metagenomic data

bioinfodlsu/bioinfodlsu.github.io

Website of the Bioinformatics Lab at DLSU Manila

bioinfodlsu/rice-pilaf

Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

bioinfodlsu/samar

Samar is a pipeline for speedy, assembly-free differential gene expression analysis in non-model organisms.

bioinfodlsu/.github

bioinfodlsu/attack_amr_pipeline

Bioinformatics pipeline for profiling anti-microbial resistance genes from hospital wastewater

bioinfodlsu/bioinfodlsu-survival-guide

Collection of reference material for FAQ from members/applicants of Bioinformatics Lab, DLSU Manila

bioinfodlsu/hiv_hts_pipeline

A Snakemake pipeline for drug-resistance profiling using HIV whole-genome NGS data

bioinfodlsu/regulated_cell_death

bioinfodlsu/samar_lite

Quick-and-dirty differential gene expression analysis pipeline that avoids computationally demanding de-novo transcriptome assembly

bioinfodlsu/basic-r-tutorial

Basics of R programming

bioinfodlsu/regulated-cell-death-playground

Collection of analysis scripts and notebooks related to regulated cell death