Pinned Repositories
breakseq2
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
ecTMB
IDP
IDP is a statistical isoform prediction method to construct possible isoform candidates from the union of long reads and short reads with spliced alignment
longislnd
LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes
LSC
LSC is a long read error correction tool. It offers fast correction with high sensitivity and good accuracy.
metasv
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
neusomatic
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
rnacocktail
somaticseq
An ensemble approach to accurately detect somatic mutations using SomaticSeq
varsim
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
The Bioinformatics Repository's Repositories
bioinform/somaticseq
An ensemble approach to accurately detect somatic mutations using SomaticSeq
bioinform/neusomatic
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
bioinform/rnacocktail
bioinform/varsim
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
bioinform/metasv
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
bioinform/breakseq2
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
bioinform/ecTMB
bioinform/IDP
IDP is a statistical isoform prediction method to construct possible isoform candidates from the union of long reads and short reads with spliced alignment
bioinform/LSC
LSC is a long read error correction tool. It offers fast correction with high sensitivity and good accuracy.
bioinform/longislnd
LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes
bioinform/swifr
bioinform/QBC_Single_Cell_Analysis_NGS
bioinform/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
bioinform/Daedalus
bioinform/huref-gs
bioinform/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
bioinform/fermi-lite
Standalone C library for assembling Illumina short reads in small regions
bioinform/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
bioinform/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data