Pinned Repositories
M6A
Methylation pattern mediated by m6A regulator and tumor microenvironment invasion in lung adenocarcinoma
mnp_training
DNA methylation-based classification of central nervous system tumours
Modeling-iron-pathways-in-the-tumor-microenvironment
Predict regulatory components and model iron pathways in the tumor microenvironment
my_WGCNA
nasopharyngeal-carcinoma
M6A-mediated molecular patterns and tumor microenvironment infiltration characterization in nasopharyngeal carcinoma
neoadjuvant-therapy-response-predictor
NMDcyt
R source code, outputs, and datasets for NMD-cytolytic immune infiltration paper (Zhao and Pritchard, PLoS Compt Biol, 2019)
NMIBC_immuno-prognostic
This repository is built to reproduce all the statistical analyses and figures in the article entitled "A Robust Immuno-Prognostic Model of Non-muscle-invasive Bladder Cancer Indicates Dynamic Interaction in Tumor Immune Microenvironment Contributes to Cancer Progression".
Ritmic
R package for studying the RegulatIon of Tumor MIcroenvironment Composition
TCGA_BRCA
bioinformatic-analysis's Repositories
bioinformatic-analysis/M6A
Methylation pattern mediated by m6A regulator and tumor microenvironment invasion in lung adenocarcinoma
bioinformatic-analysis/nasopharyngeal-carcinoma
M6A-mediated molecular patterns and tumor microenvironment infiltration characterization in nasopharyngeal carcinoma
bioinformatic-analysis/neoadjuvant-therapy-response-predictor
bioinformatic-analysis/NMDcyt
R source code, outputs, and datasets for NMD-cytolytic immune infiltration paper (Zhao and Pritchard, PLoS Compt Biol, 2019)
bioinformatic-analysis/NMIBC_immuno-prognostic
This repository is built to reproduce all the statistical analyses and figures in the article entitled "A Robust Immuno-Prognostic Model of Non-muscle-invasive Bladder Cancer Indicates Dynamic Interaction in Tumor Immune Microenvironment Contributes to Cancer Progression".
bioinformatic-analysis/Ritmic
R package for studying the RegulatIon of Tumor MIcroenvironment Composition
bioinformatic-analysis/BostonGene
bioinformatic-analysis/ConsensusTME
bioinformatic-analysis/COVID19
bioinformatic-analysis/DMP
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
bioinformatic-analysis/Enrichment-Analysis
R codes I uam using for getting from RNA-seq raw count to Pathways
bioinformatic-analysis/EpiMesen-ImmuneFilteration
Immune infiltration in cancer tissues: epithelial to mesenchymal transition
bioinformatic-analysis/ESCC_TIME
Tumor Immune MicroEnvironment (TIME) of Esophageal Squamous Cell Carcinoma (ESCC)
bioinformatic-analysis/FIO-m6A-immune
Prognosis Analysis and Validation of m6A Signature and Tumor Immune Microenvironment in Glioma
bioinformatic-analysis/Identification-of-prognostic-related-genes-of-TME-derived-from-ESCA
Identification of prognostic related genes of tumor microenvironment derived from esophageal cancer patients
bioinformatic-analysis/ImmuCC
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
bioinformatic-analysis/immune-infiltration
R codes for data analysis and visualization in immune infiltration
bioinformatic-analysis/imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
bioinformatic-analysis/Interleukin-17-and-cytokine-related-signalings-are-determinants-for-tumor-immune-microenvironment-in
Interleukin-17 and cytokine-related signalings are determinants for tumor immune microenvironment in triple-negative breast cancer: in silico integrated analysis
bioinformatic-analysis/IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
bioinformatic-analysis/ISTMEscore
Calculation of immune and stromal scores in tumor microenvironment
bioinformatic-analysis/lmQCM
R package lmQCM: An Algorithm for Gene Co-Expression Analysis
bioinformatic-analysis/TME_metabolism
A pan-cancer metabolic atlas of the tumor microenvironment
bioinformatic-analysis/TMEscore
Calculating Tumor microenvironment score
bioinformatic-analysis/TMExplorer
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
bioinformatic-analysis/TNBC_hypoxia
Title: Identification of a hypoxia related molecular classification and hypoxic tumor microenvironment signature for predicting the prognosis of patients with triple negative breast cancer
bioinformatic-analysis/TSUNAMI
An R software for Gene Co-Expression Analysis
bioinformatic-analysis/tumor-microenvironment
tumor microenvironment
bioinformatic-analysis/TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
bioinformatic-analysis/uyar_et_al_multiomics_deeplearning
maui goes pancancer