Prediction of circRNA-disease associations based on inductive matrix completion.
Menglu Li (mengluli@foxmail.com) and Mengya Liu (woshiliangming@outlook.com ) from Institutes of Physical Science and Information Technology and School of Computer Science and Technology, Anhui University.
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| FILE NAME | DESCRIPTION |
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|chr_diseasematrix.csv | known circRNA-disease associations information, 1 indicates that circRNA and disease are associated, 0 indicates that their associations is currently in an unknown state.|
|dissimilarity.csv | disease semantic similarity (DOSim (DOSE R package)). |
|seqsimilarity.csv | circRNA sequence similarity (Levenshtein distance). |
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| FILE NAME | DESCRIPTION |
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| main_LOOCV.m | leave-one-out cross validation. |
| SIMCCDA_demo.m | function predicting potential circRNA-disease associations. |
| gkl.m | function computing Gaussian interaction profile kernel. |
| PCA.m | function extracting primary feature vectors via PCA. |
| SIMC | inductive matrix completion. |
| roc.m | function computing area under ROC curve. |
Please feel free to contact us if you need any help: jfxia@ahu.edu.cn.