biokcb
Data scientist working on medical robotics research. Other interests: workflows, computational biology, apps, HPC, education
Pinned Repositories
2019-04-05-training-workshop-test
aquatx-dashboard
bio-data-analysis
Miscellaneous scripts for analysis of biological data
biokcb
github profile
shinySeqBrowser
A shiny app for browsing RNA-seq reads mapped across transcripts
solar-radiation-budget
Project analyzing and visualizing the Earth's solar radiation budget
youtube-data-project
A repository containing code for downloading, processing, and analyzing YouTube data for my Insight project
user_guide
The CWL v1.0 - v1.2 user guide
pipeline-examples
Examples of bioinformatics pipeline languages: Nextflow, Snakemake, and CWL
tinyRNA
tinyRNA provides an all-in-one solution for precision analysis of sRNA-seq data. At the core of tinyRNA is a highly flexible counting utility, tiny-count, that allows for hierarchical assignment of reads to features based on positional information, extent of feature overlap, 5’ nucleotide, length, and strandedness.
biokcb's Repositories
biokcb/solar-radiation-budget
Project analyzing and visualizing the Earth's solar radiation budget
biokcb/youtube-data-project
A repository containing code for downloading, processing, and analyzing YouTube data for my Insight project
biokcb/2019-04-05-training-workshop-test
biokcb/aquatx-dashboard
biokcb/bio-data-analysis
Miscellaneous scripts for analysis of biological data
biokcb/biokcb
github profile
biokcb/shinySeqBrowser
A shiny app for browsing RNA-seq reads mapped across transcripts
biokcb/coxen
An implementation of the COXEN algorithm
biokcb/dbt-snowflake-summit-2023-hands-on-lab-snowpark
biokcb/gampost
biokcb/python-novice-inflammation
Software Carpentry introduction to Python for novices using inflammation data.
biokcb/self-learning
A personal repository for practicing and learning new concepts
biokcb/workflows
Community maintained workflows & tools (with examples)