Pinned Repositories
ADuLTCode
awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
awesome-multitrait-gwas
List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
awesome-R
A curated list of awesome R packages, frameworks and software.
bioc-intro
Bioconductor data science introduction
biomguler
Config files for my GitHub profile.
biomguler.github.io
The IMMEnSE Consortium Website
book
G-WASPiper
This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.
GattacaNet2
biomguler's Repositories
biomguler/G-WASPiper
This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.
biomguler/GattacaNet2
biomguler/ADuLTCode
biomguler/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
biomguler/awesome-multitrait-gwas
List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
biomguler/bioc-intro
Bioconductor data science introduction
biomguler/biomguler
Config files for my GitHub profile.
biomguler/biomguler.github.io
The IMMEnSE Consortium Website
biomguler/book
biomguler/clonal-hematopoiesis
This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis" (https://www.medrxiv.org/content/10.1101/2022.01.06.22268846v1).
biomguler/fastreeR
Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
biomguler/GCPBayes-Pipeline
biomguler/GenoTools
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
biomguler/gps_cpp
C++ code for calculating the GPS statistic.
biomguler/gsa-mixer
biomguler/gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
biomguler/hybridgwais
Fast epistasis screening software using hardware accelerators (incl. FPGA and GPU)
biomguler/i-LDSC
Code and simulations using interaction LD score regression
biomguler/multi-ancestry-pwmr
Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
biomguler/nf-pipeline-regenie
GWAS and rare variants tests at high speed using regenie
biomguler/oneliners
Useful bash one-liners for bioinformatics.
biomguler/PGSbuilder
PGSbuilder is an integrative tool for constructing polygenic score models
biomguler/Pleiotropy
biomguler/pQTLtools
pQTL tools
biomguler/PRScs
Polygenic prediction via continuous shrinkage priors
biomguler/sumFREGAT
:exclamation: This is a read-only mirror of the CRAN R package repository. sumFREGAT — Fast Region-Based Association Tests on Summary Statistics
biomguler/taxonium
Explore very large trees in the browser
biomguler/tislab.org
Public-facing website for tislab.org
biomguler/ukbpheno
biomguler/VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)