biona001/GhostKnockoffGWAS

Issues

• Improve coverage

  #14 opened 3 months ago by biona001
  0

• Custom Reference Panel in PLINK Format

  #28 opened 3 months ago by AFSHINJAM
  3

• Using your method with our data

  #17 opened 3 months ago by Ennazhou
  6

• Tutorial for `solveblock`

  #27 opened 3 months ago by biona001
  0

• ERROR: id is missing

  #26 opened 3 months ago by biona001
  0

• Roadmap for v0.2.0 release

  #18 opened 3 months ago by biona001
  1

• Explicitly check `CHROM` field is Int

  #23 opened 3 months ago by biona001
  0

• `manhattan.R` does not work on output of `solveblock`

  #22 opened 3 months ago by biona001
  0

• Optimize VCF reading time

  #21 opened 3 months ago by biona001
  0

• Set `random-shuffle=false` by default

  #16 opened 3 months ago by biona001
  0

• `solveblock`: matrix contains Infs or NaNs

  #20 opened 3 months ago by biona001
  0

• `solveblock` throws crazy error when no SNPs is between `start_bp` and `end_bp`

  #19 opened 3 months ago by biona001
  0

• Parse LD files with either hg19 or hg38, but not both

  #11 opened 3 months ago by biona001
  0

• Docs for `solve_blocks()`

  #15 opened 3 months ago by biona001
  0

• VCF: run `solve_blocks()` on typed SNPs only

  #12 opened 3 months ago by biona001
  0

• FileIO error

  #7 opened 6 months ago by biona001
  2

• wget `example_zfile.txt` broken

  #9 opened 6 months ago by biona001
  0

• Error in CMplot

  #8 opened 6 months ago by biona001
  0

• manhattan plots not utilizing within-group knockoff filter

  #6 opened 7 months ago by biona001
  0

• Improve documentation

  #3 opened 7 months ago by biona001
  0

• very slow manhattan plots

  #5 opened 7 months ago by biona001
  1

• Non-linux support?

  #4 opened 7 months ago by biona001
  0

• Roadmap until 1.0 release

  #1 opened 7 months ago by biona001
  0