Pinned Repositories
Beamerscope_MATLAB
This is a repository for a 3D printed DIY microscope with a structured illumination using a LED video-projector and an Android Cellphone. This is the MATLAB Code to create a machine learning dataset from phasecontrast images and its corresponding optimized illumination sources.
cellSTORM-Tensorflow
Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: https://arxiv.org/abs/1804.06244
FourierTools.jl
Tools for working with Fourier space.
IndexFunArrays.jl
Fun with indices (and functions on them)
Introduction_Image_Processing_Julia
Material for 6th NORMIC Image Processing Workshop
NDTools.jl
A lightweight package for utility functions for working with multi-dimensional data
Scalable-Angular-Spectrum-Method-SAS
Implementations of the Scalable Angular Spectrum Method
SeparableFunctions.jl
Calculates multidimensional functions faster by exploiting their separability.
TiledViews.jl
Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.
View5D
An image viewer for up to 5-dim data www.nanoimaging.de/View5D
Nanoimaging at the IPHT Leibniz Institut Jena's Repositories
bionanoimaging/FourierTools.jl
Tools for working with Fourier space.
bionanoimaging/Scalable-Angular-Spectrum-Method-SAS
Implementations of the Scalable Angular Spectrum Method
bionanoimaging/TiledViews.jl
Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.
bionanoimaging/cellSTORM-Tensorflow
Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: https://arxiv.org/abs/1804.06244
bionanoimaging/IndexFunArrays.jl
Fun with indices (and functions on them)
bionanoimaging/NDTools.jl
A lightweight package for utility functions for working with multi-dimensional data
bionanoimaging/SeparableFunctions.jl
Calculates multidimensional functions faster by exploiting their separability.
bionanoimaging/View5D
An image viewer for up to 5-dim data www.nanoimaging.de/View5D
bionanoimaging/Introduction_Image_Processing_Julia
Material for 6th NORMIC Image Processing Workshop
bionanoimaging/PSFDistiller.jl
Distills a point spread function (PSF) from a measurement of beads by selecting local maxima that are separate enough from other ones.
bionanoimaging/PSFToolbox-Matlab
Includes various ways to calculate point spread functions (PSFs) with a focus on high NA fluorescence microscopy.
bionanoimaging/bionanoimaging.github.io
Repository for hosting the website files
bionanoimaging/cellSTORM-MATLAB
Code to generate datasets for the cellSTORM approach
bionanoimaging/cellSTORM-ANDROID
Application to readout BW-frames from HUAWEI derived from Camera2RAW and FreedCAM
bionanoimaging/Beamerscope-ANDROID
Beamerscope-ANDROID
bionanoimaging/cellSTORM_TENSORFLOW
This is the APP to localize dSTORM experiments using an Android cellphone and an image-to-image GAN
bionanoimaging/matlab_tools
bionanoimaging/NanoImagingPack
Python pack for nanoimaging-related tasks
bionanoimaging/Tensorflow_MultipleScattering
Repo to compare different single/multiple scattering algorithms computationally.
bionanoimaging/cameracalibration
This is a Napari Plugin that calibrates your camera w.r.t. readnoise and gain
bionanoimaging/DiscoverEpidemicModel.jl
With this repo we provide a toolbox for automatic model discovery in epidemiology. We therefor start with Sars-CoV-2 modelling.
bionanoimaging/EM-guided_deconv
bionanoimaging/Image-Processing-In-Microscopy-2023-2024
bionanoimaging/ImageSharpness.jl
bionanoimaging/JavaCall.jl
Call Java from Julia
bionanoimaging/JuliaConvolutionPerformance
Performance comparison of different convolution approaches
bionanoimaging/Khoros
bionanoimaging/khorosBinLin64
binaries for the khoros-inspired c-helpers
bionanoimaging/ShiftedArrays.jl
Lazy shifted arrays for data analysis in Julia
bionanoimaging/SmartLense
Android Application for controlling a LED-Matrix of a 3D-printed Microscope Framework.