Data structures and code to read/write BioC XML.
BioC XML format can be used to share text documents and annotations. The development of Java BioC IO API is independent of the particular XML parser used.
<dependency>
<groupId>com.pengyifan.bioc</groupId>
<artifactId>pengyifan-bioc</artifactId>
<version>1.0.2</version>
</dependency>
or
<repositories>
<repository>
<id>oss-sonatype</id>
<name>oss-sonatype</name>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
</repositories>
...
<dependency>
<groupId>com.pengyifan.bioc</groupId>
<artifactId>pengyifan-bioc</artifactId>
<version>1.0.3-SNAPSHOT</version>
</dependency>
- Yifan Peng (yip4002@med.cornell.edu)
- Don Comeau
- Rezarta Islamaj Dogan
- Haibin Liu
- Thomas C. Wiegers
- John Wilbur
The official BioC webpage is available with all up-to-date instructions, code, and corpora in the BioC format, and other research on, based on and related to BioC.
- Comeau,D.C., Doğan,R.I., Ciccarese,P., Cohen,K.B., Krallinger,M., Leitner,F., Lu,Z., Peng,Y., Rinaldi,F., Torii,M., Valencia,V., Verspoor,K., Wiegers,T.C., Wu,C.H., Wilbur,W.J. (2013) BioC: A minimalist approach to interoperability for biomedical text processing. Database: The Journal of Biological Databases and Curation.
- Peng,Y., Tudor,C., Torii,M., Wu,C.H., Vijay-Shanker,K. (2014) iSimp in BioC standard format: Enhancing the interoperability of a sentence simplification system. Database: The Journal of Biological Databases and Curation.