biopragmatics/bioversions

HGNC version out of date: missing 2023-03-02

Closed this issue · 2 comments

Looking at https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/, the most recent monthly HGNC release is hgnc_complete_set_2023-03-02.json. But I don't see this or other recent versions in bioversions:

- name: HGNC
prefix: hgnc
releases:
- homepage: https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2022-06-01.json
retrieved: '2022-06-22'
version: '2022-06-01'
- homepage: https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2022-07-01.json
retrieved: '2022-07-01'
version: '2022-07-01'
- homepage: https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2022-08-01.json
retrieved: '2022-08-01'
version: '2022-08-01'

Don't immediately see any problems in src/bioversions/sources/hgnc.py.

Looks like some changes in tox caused the nightly script to stop working. Testing a fix now

Fixed in 867b2ff