biosimulations/biosimulations-physiome

Switch to download files via .tar.gz export or Git repository

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Exported COMBINE archives from Physiome, e.g., from https://models.physiomeproject.org/e/43f/download_generated_omex are missing some files.

Example missing files:

  • e/43f
    • /components/default-variable-values.xml
    • /components/IK.xml
    • /components/Ileak.xml
    • /components/INa.xml
    • /components/units.xml
    • /experiments/periodic-IStim-protocol.xml
    • /experiments/time.xml
  • e/49f
    • /cell_model_interface.xml
    • /default_variable_values.xml
    • /units_model.xml
  • e/440
    • /components/default-variable-values.xml
    • /components/IK.xml
    • /components/Ileak.xml
    • /components/INa.xml
    • /components/units.xml
    • /experiments/periodic-IStim-protocol.xml
    • /experiments/time.xml

These files are present in Physiome. They have to be obtained using either the .tar.gz export or Git repository.

Example exposure 43f

The current code downloads the git repo and packages the omex archive manually