Submit Smoldyn 2.73
Closed this issue · 12 comments
id: smoldyn
version: 2.73
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/master/biosimulators.json
specificationsPatch:
version: 2.73
image:
url: ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:2.72
digest: "sha256:8aa0cd3eb3b0219dda000f243b4745dc3965fe5f1c082a2dfb611b7ae77edbc6"
validateImage: true
commitSimulator: true
The validation/submission of your simulator failed.
- Simulator submissions must provide the id for the simulator.
-
- Simulator submissions should only use the keys "id", "version", "specificationsUrl", "specificationsPatch", validateImage", and "commitSimulator". The following keys are invalid:
- - nameThe complete log of your validation/submission job, including further information about the failure, is available for 90 days here.
If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.
The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).
The validation/submission of your simulator failed.
- Simulator submissions must provide the id for the simulator.
-
- Simulator submissions should only use the keys "id", "version", "specificationsUrl", "specificationsPatch", validateImage", and "commitSimulator". The following keys are invalid:
- - nameThe complete log of your validation/submission job, including further information about the failure, is available for 90 days here.
If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.
The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).
Thank you @AlexPatrie for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
The validation/submission of your simulator failed.
- Simulator specifications could not be retrieved from https://raw.githubusercontent.com/ssandrews/Smoldyn/biosimulators.json.
-
- 400 Client Error: Bad Request for url: https://raw.githubusercontent.com/ssandrews/Smoldyn/biosimulators.jsonThe complete log of your validation/submission job, including further information about the failure, is available for 90 days here.
If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.
The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).
Thank you @AlexPatrie for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
The validation/submission of your simulator failed.
- The simulator specifications from `https://raw.githubusercontent.com/ssandrews/Smoldyn/master/biosimulators.json` are invalid. The specifications of simulation tools must adhere to BioSimulators' schema. BioSimulators' schema is available in both JSON Schema and Open API Specifications formats. Documentation is available at https://api.biosimulators.org/.
-
- - Bad Request (400):
-
- Object is invalid: Property or parameter 'biosimulators' is invalid.
-
- Value:
- BiosimulatorsMeta {
- validationTests: null,
- imageVersion: '2.0.0',
- specificationVersion: '1.0.0',
- validated: false
- }
-
- Error(s):
- - Property or parameter 'imageVersion' is invalid.
-
- Value:
- '2.0.0'
-
- Error(s):
- - isEnum: imageVersion must be one of the following values: 1.0.0
-
- Property 'image' is invalid.
-
- Value:
- Image {
- operatingSystemType: 'Linux',
- url: 'ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:latest',
- format: EdamOntologyDockerImageIdVersion {
- version: null,
- supportedFeatures: [],
- namespace: 'EDAM',
- id: 'format_3973'
- }
- }
-
- Error(s):
- - Property or parameter 'url' is invalid.
-
- Value:
- 'ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:latest'
-
- Error(s):
- - isImageUrl: An image URL must be a valid URL without a protocol and with a tag other than `latest` (e.g., `ghcr.io/biosimulators/tellurium:2.2.1`)
- Property 'digest' is invalid.
-
- Value:
- undefined
-
- Error(s):
- - isImageDigest: An image digest must be a valid sha256 hash with the "sha256:" prefix
- - isNotEmpty: digest should not be emptyThe complete log of your validation/submission job, including further information about the failure, is available for 90 days here.
If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.
The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).
Thank you @AlexPatrie for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
The validation/submission of your simulator failed.
- The simulator specifications from `https://raw.githubusercontent.com/ssandrews/Smoldyn/master/biosimulators.json` are invalid. The specifications of simulation tools must adhere to BioSimulators' schema. BioSimulators' schema is available in both JSON Schema and Open API Specifications formats. Documentation is available at https://api.biosimulators.org/.
-
- - Bad Request (400):
-
- Object is invalid: Property or parameter 'image' is invalid.
-
- Value:
- Image {
- operatingSystemType: 'Linux',
- url: 'ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:latest',
- format: EdamOntologyDockerImageIdVersion {
- version: null,
- supportedFeatures: [],
- namespace: 'EDAM',
- id: 'format_3973'
- },
- digest: 'sha256:8aa0cd3eb3b0219dda000f243b4745dc3965fe5f1c082a2dfb611b7ae77edbc6'
- }
-
- Error(s):
- - Property or parameter 'url' is invalid.
-
- Value:
- 'ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:latest'
-
- Error(s):
- - isImageUrl: An image URL must be a valid URL without a protocol and with a tag other than `latest` (e.g., `ghcr.io/biosimulators/tellurium:2.2.1`)The complete log of your validation/submission job, including further information about the failure, is available for 90 days here.
If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.
The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).
Thank you @AlexPatrie for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
- You (@AlexPatrie) do not have permissions to update the specifications of Smoldyn. Only the members of @biosimulators/smoldyn can update the specifications of Smoldyn. Please contact the members of this group to request permissions to update Smoldyn.Thank you @AlexPatrie for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.
- You (@AlexPatrie) do not have permissions to update the specifications of Smoldyn. Only the members of @biosimulators/smoldyn can update the specifications of Smoldyn. Please contact the members of this group to request permissions to update Smoldyn.