Should additional algorithms and algorithm parameters be exposed through KISAO?
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jonrkarr commented
Question for tellurium/libRoadRunner developers:
Algorithms
- euler
- NLEQ1: KISAO_0000568
Algorithm parameters (tellurium name: default)
- CVODE
- stiff: true
- multiple_steps: false
- euler
- subdivision_steps: 1
- RK45
- epsilon: 1e-12 Maximum error tolerance
- Gillespie
- nonnegative: false
- NLEQ1, NLEQ2
- allow_presimulation: false
- presimulation_maximum_steps: 100
- presimulation_time: 100
- allow_approx: false
- approx_tolerance: 1e-6
- approx_maximum_steps: 10000
- approx_time: 10000
- broyden_method: 0
- linearity: 3
jonrkarr commented
Moved to tellurium repo. See sys-bio/tellurium#485.