biosustain/dsp_workshop_bash

Resources to be used in conjunction with the Bash workshop from the Data Science Platform

This is an overview of links related to the Bash workshop held at DTU aimed at Biosustain and Bioengineering.

folders contain material for the interactive part.

Links

The minimum requrement to follow the workshop is to install git bash for windows users, there are no initial requirements for mac users.

direct link to this file:

https://raw.githubusercontent.com/biosustain/dsp_workshop_bash/refs/heads/main/Readme.md

Windows links

Git Bash: https://gitforwindows.org

Windows Terminal: https://aka.ms/terminal

Optional: Set up git bash in Windows Terminal (blog post)

• https://medium.com/@techpreacher/using-git-bash-with-the-microsoft-terminal-bd1f71fa17a1 or
• https://www.practicaldatascience.org/notebooks/PDS_not_yet_in_coursera/00_setup_env/setup_commandline_windows.html

Windows Subsystem for Linux with Ubuntu LTS (may require admin rights, you can wait until you need it) https://documentation.ubuntu.com/wsl/en/latest/guides/install-ubuntu-wsl2/

MacOS links:

Package managers:

• https://www.macports.org/
• https://brew.sh/

Advanced Terminal: https://iterm2.com/

DTU Compute resource:

https://www.hpc.dtu.dk/?page_id=862

Cross platform terminal

https://alacritty.org/

man pages online:

• https://www.man7.org/linux/man-pages/index.html
• https://linux.die.net/man/

Access to HPC

https://www.hpc.dtu.dk/?page_id=2501

File transfer to HPC:

https://www.hpc.dtu.dk/?page_id=4377

Git:

DTU gitlab

• https://www.gbar.dtu.dk/index.php/faq/94-gitlab

public github

• https://github.com/