Here you can find supporting materials for:
ISME Communications paper:
AEM paper: – in submission
Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant
Contents:
AEM_Peña-Montenegro_et_al_2024
- SupplementaryData1.xlsx Differential expression analysis and annotation of predicted gene sequences in the Kleindienst et al. metatranscriptome. The extended version of this file includes more details about annotation features and regularized log-normalized of mapped counts per experimental observation.
- SupplementaryData2.xlsx Representative sequences to build a guiding phylogenetic tree for phylobetadiversity analysis of the metatranscriptomic dataset.
- SuppCode_p1.pdf This includes all scripts used for the AEM paper, except the code run in R.
- SuppCode_p1.py Same as SuppCode_p1.pdf but in executable python script.
- SuppCode_p2_Rsection.pdf This includes all scripts used for the AEM paper that were run in R.
- SuppCode_p2_Rsection.r Same as SuppCode_p2_Rsection.pdf but in executable R script.
ISMECOMM_Peña-Montenegro_et_al_2023
- SupplementaryData1.xlsx Differentially expressed genes and corresponding available annotation in Colwellia and Marinobacter DEM-pangenomes.
- SupplementaryData2.xlsx Mapping coverage and mapping rates of metatranscriptomic libraries recoved by Colwellia and Marinobacter reference genomes.
- SupplementaryData3.pdf Anvio code for the Colwellia CA-Metatranscritome.
- SupplementaryData4.pdf Anvio code for the Marinobacter CA-Metatranscriptome.