/gatk-preprocess

A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. Category:Single-Sample

Primary LanguageWDLMIT LicenseMIT

gatk-prepocess

This Biowdl workflow will preprocess a BAM file, preparing it for variantcalling based on the GATK Best Practises.

Documentation

You can find the documentation here.

About

This workflow is part of Biowdl, developed by the SASC team at Leiden University Medical Center.

Contact

For any question related to this workflow, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.