biplabendu
Data Scientist/Manager, ABCD and HBCD Study. Research on the ecological role of biological rhythms in social animals.
UC San Diego; Stanford University
Pinned Repositories
ant_ppi
In this repository we deposited the Supplementary data/script used in study "Genome-wide inference of Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs".
ants
Stats from AntWiki
book
Comparative-transcriptomics-of-ants
Comparative transcriptomics reveals the conserved regulatory building blocks involved in the maintenance and parallel evolution of caste and other phenotypic traits in ants
COVID19_India
derby
Statistics for roller derby obtained from the WFTDA Statsbook.
my_dummy_website
A dummy website created using RMarkdown and hosted on GitHub pages
rhythm_detection_benchmark
Shiny_apps
timecourseRnaseq
Analyses And Visualisation Of Timecourse RNASeq Data
biplabendu's Repositories
biplabendu/rhythm_detection_benchmark
biplabendu/Shiny_apps
biplabendu/ant_ppi
In this repository we deposited the Supplementary data/script used in study "Genome-wide inference of Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs".
biplabendu/book
biplabendu/Comparative-transcriptomics-of-ants
Comparative transcriptomics reveals the conserved regulatory building blocks involved in the maintenance and parallel evolution of caste and other phenotypic traits in ants
biplabendu/COVID19_India
biplabendu/Das_et_al_2021
biplabendu/deBekker_and_Das_2021
code to build and annotate circadian GCNs
biplabendu/derby
Statistics for roller derby obtained from the WFTDA Statsbook.
biplabendu/homepage
biplabendu/my_dummy_website
A dummy website created using RMarkdown and hosted on GitHub pages
biplabendu/timecourseRnaseq
Analyses And Visualisation Of Timecourse RNASeq Data
biplabendu/Will_et_al_2020
This repository contains annotated code for the function that performs functional enrichment analysis of GO/PFAM terms using a hypergeometric test, used in Will et al. 2020
biplabendu/Das_et_al_2022a
Fungal parasites - Timecourse RNASeq
biplabendu/empirical-JTK_CYCLE-with-asymmetry
This repository contains the code described in Hutchison, Maienschein-Cline, and Chiang et al. (2015) Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. PLoS Comput Biol 11(3): e1004094. doi:10.1371/journal.pcbi.1004094
biplabendu/formica-methylation
Using RRBS to study caste and development stage-specific methylation in the ant Formica exscecta
biplabendu/Intro_R_Workshop_2021
workshop for teaching R to undergrad students
biplabendu/limorhyde
LimoRhyde R package
biplabendu/manuscripts
biplabendu/purrr-tutorial
Materials for getting to the know the R package purrr
biplabendu/python-machine-learning-book-2nd-edition
The "Python Machine Learning (2nd edition)" book code repository and info resource
biplabendu/rpackages
R package development - the Leek group way!
biplabendu/sam_tutorial
SAM tutorial Fall 2023 (forked)
biplabendu/SDS375
SDS 375 Data Visualization in R
biplabendu/TidyTuesday
#TidyTuesday submissions
biplabendu/timecourse_geneexpression_data
Datasets compiled and published by Laloum and Robinson-Rechavi