Pinned Repositories
2018-Data-Science-Bowl
Find the nuclei in divergent images to advance medical discovery
2018-TAGM-paper
2018 TAGM paper
3D-Unet
A simple implementation of 3D-Unet on a 3D Prostate Segmentation Task
3DUnetCNN
Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation
Covid-19
Estimating Uncertainty and Interpretability in Deep Learning for Coronavirus (COVID-19) Detection
DeepHistoClass
Leveraging-uncertainty-information-from-deep-neural-networks-for-disease-detection
Leveraging uncertainty information from deep neural networks for disease detection
MAPIE
A scikit-learn-compatible module for estimating prediction intervals.
posterior-sampling-UQ
posterior sampling (from the paper "deep bayesian inversion") for MRI uncertainty quantification and reconstruction
swa_uncertainties
Code repo for "Fast Uncertainty Estimates and Bayesian Model Averaging of DNNs"
birajaghoshal's Repositories
birajaghoshal/MAPIE
A scikit-learn-compatible module for estimating prediction intervals.
birajaghoshal/AAAI-22
Repo for "Fair Conformal Predictors for Applications in Medical Imaging" paper
birajaghoshal/aang_conformal-prediction
Lightweight, useful implementation of conformal prediction on real data.
birajaghoshal/ADAE
SIIM/ISIC 2020 Challenge Winning Algorithm (All Data Are Ext)
birajaghoshal/AIF360
A comprehensive set of fairness metrics for datasets and machine learning models, explanations for these metrics, and algorithms to mitigate bias in datasets and models.
birajaghoshal/arc
Adaptive and Reliable Classification: efficient conformity scores for multi-class classification problems
birajaghoshal/awesome-generative-ai-guide
A one stop repository for generative AI research updates, interview resources, notebooks and much more!
birajaghoshal/BDL-Evaluate
birajaghoshal/biscuit
Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding
birajaghoshal/cancres-2022-intratumoral-heterogeneity-dl-paper
birajaghoshal/Conformal_analyses
birajaghoshal/conformal_training
This repository contains a Jax implementation of conformal training corresponding to the ICLR'22 paper "learning optimal conformal classifiers".
birajaghoshal/ConformalPredictionTutorial
birajaghoshal/DeepBiofilm
Deep learning for analyzing bacterial biofilm images, including 3D GAN image synthesis, dataset quality assessment with SSQA, and a downstream cell segmentation test using 3D u-net.
birajaghoshal/deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
birajaghoshal/EvPSNet
birajaghoshal/FashionOutfitRecommenderGenAI
birajaghoshal/federated-conformal-prediction
birajaghoshal/marugoto
Tools to build deep learning pipelines.
birajaghoshal/Multi_Class_Multi_Label_Classification
Official Pytorch Implementation of: "Asymmetric Loss For Multi-Label Classification"(ICCV, 2021) paper
birajaghoshal/OCT_Fluid_Segmentation
birajaghoshal/Pan-cancer-profiling
This repository contains the code to reproduce our exploratory analysis of a pan-cancer plasma proteomics dataset, including differential expression analysis and disease classification (https://doi.org/10.1038/s41467-023-39765-y). The data can be explored in the Human Protein Atlas: www.proteinatlas.org/humanproteome/disease.
birajaghoshal/RCC_textures_and_lymphocytes_publication_data_analysis
birajaghoshal/RCC_textures_and_lymphocytes_publication_image_analysis
birajaghoshal/RCCGNet
A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
birajaghoshal/Retina
birajaghoshal/scGPT
birajaghoshal/SD-LayerNet
birajaghoshal/semantic_uncertainty
birajaghoshal/stain-transfer
Comparative evaluation of image-to-image translation methods for stain transfer in histopathology