bkbonde

Computational Biologist, Systems Biology, Python, Innovation Development, AI-ML and Quantum Computing

London

Pinned Repositories

3d-force-graph
3D force-directed graph component using ThreeJS/WebGL
Language:HTML00
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
Language:R00
af2_conformations
A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
Language:Python00
af_backprop
Language:Python00
ai-by-hand-excel_cloned
00
algorithms
Minimal examples of data structures and algorithms in Python
Language:Python00
alphafold
Open source code for AlphaFold.
Language:Python00
Blueqat-tutorials
Tutorials for Blueqat
Language:Jupyter Notebook10
facets
Visualizations for machine learning datasets
Language:Jupyter Notebook10
python-cheatsheet
Comprehensive Python Cheatsheet
Language:Python2 0 00

bkbonde's Repositories

bkbonde/ai-by-hand-excel_cloned
00
bkbonde/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
bkbonde/awesome-ls-ventures
Awesome list of the data and AI/ML related projects with direct Life Science Companies participation
bkbonde/blat
BLAST-Like Alignment Tool
Language:C
bkbonde/coding-interview-university
A complete computer science study plan to become a software engineer.
bkbonde/cpython
The Python programming language
bkbonde/cyphergui
GUI admin tool for graph databases.
Language:TypeScript0 0
bkbonde/data-engineering-zoomcamp
Free Data Engineering course!
bkbonde/From-0-to-Research-Scientist-resources-guide
Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.
bkbonde/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
bkbonde/HCBASimWeb
HCBA Sim Webpage
Language:JavaScript
bkbonde/homemade-machine-learning
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
bkbonde/kubernetes-the-hard-way
Bootstrap Kubernetes the hard way on Google Cloud Platform. No scripts.
bkbonde/Neo4j_blogs
Jupyter notebooks that support my graph data science blog posts at https://bratanic-tomaz.medium.com/
bkbonde/pachyderm
Data-Centric Pipelines and Data Versioning
Language:Go0 0
bkbonde/papers-for-molecular-design-using-DL
List of molecular design using Generative AI and Deep Learning
bkbonde/pocketminer
pocketminer
bkbonde/pydeps
Python Module Dependency graphs
Language:Python
bkbonde/pyglpk
Updated fork of T. Finley's PyGLPK module
Language:C0 0
bkbonde/pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
Language:Python0 0
bkbonde/pylint-errors
A curated list of pylint errors with explanation and examples
Language:Python0 0
bkbonde/Pymol-script-repo
Collected scripts for Pymol
Language:Python1 0
bkbonde/QC_stoned-selfies
This repository contains code for the paper: Beyond Generative Models: Superfast Traversal, Optimization, Novelty, Exploration and Discovery (STONED) Algorithm for Molecules using SELFIES
bkbonde/qml-benchmarks
Code to benchmark quantum machine learning models
bkbonde/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
bkbonde/schemaspy
SchemaSpy code home
Language:HTML
bkbonde/science_flask
ScienceFlask: an open-source template for scientific web-app development
Language:HTML2 0
bkbonde/solver_benchmark
bkbonde/stats.js
JavaScript Performance Monitor
Language:JavaScript
bkbonde/uvadlc_notebooks
Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2022/Spring 2022