Pinned Repositories
academic-keyword-occurrence
Extracts the historic word occurrence of a search term in academic papers
actor-example
Example of using Akka actors. Based on talk given to Cork Java Users Group in Feb 2016.
adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
akka
Akka Project
akka-snapshot-bug
bacterialGWAS
A pipeline for performing genome-wide association tests for bacterial genomes.
field-of-genes
Experimental code behind GigaScience paper "Field of Genes"
gittest
Test repository for experimenting with Git.
phd-paper1
Engineering Bioinformatics: Building Reliability, Performance and Productivity into Bioinformatics Software
zoom-r24-bitwig-controller
Bitwig Extension written in Java/Kotlin that allows the use of the Zoom R24 (and 12) as a control surface for Bitwig Studio.
blawlor's Repositories
blawlor/field-of-genes
Experimental code behind GigaScience paper "Field of Genes"
blawlor/phd-paper1
Engineering Bioinformatics: Building Reliability, Performance and Productivity into Bioinformatics Software
blawlor/zoom-r24-bitwig-controller
Bitwig Extension written in Java/Kotlin that allows the use of the Zoom R24 (and 12) as a control surface for Bitwig Studio.
blawlor/actor-example
Example of using Akka actors. Based on talk given to Cork Java Users Group in Feb 2016.
blawlor/academic-keyword-occurrence
Extracts the historic word occurrence of a search term in academic papers
blawlor/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
blawlor/akka
Akka Project
blawlor/bacterialGWAS
A pipeline for performing genome-wide association tests for bacterial genomes.
blawlor/biopy
tutorials from bioinformatics using python
blawlor/containers
Bioinformatics containers
blawlor/datasci_course_materials
Public repository for course materials for the Data Science at Scale Specialization at Coursera
blawlor/gatk
Official code repository for GATK versions 4 and up
blawlor/google-map
Google Maps web components
blawlor/JAligner
Biological Sequence Alignment
blawlor/kafka
Mirror of Apache Kafka
blawlor/kubernetes-kafka
Kafka cluster as Kubernetes StatefulSet, plain manifests and config
blawlor/microservices-demo
Deployment scripts & config for Sock Shop
blawlor/parser
A parsing library, focused on simplicity and great error messages
blawlor/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
blawlor/pkg-manager-review
Manubot Repo for Package Manager Review Paper
blawlor/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
blawlor/protobuf-net
Protocol Buffers library for idiomatic .NET
blawlor/reactive-kafka
Reactive Streams API for Apache Kafka
blawlor/scalabase
Dockerfile for basis of scala development environment
blawlor/snippy
:scissors: :zap: Rapid bacterial SNP calling and core genome alignments
blawlor/snippygubbins
Pipeline of snippy and gubbins for performing phylogenomic analysis from fasta file input.
blawlor/terraform-aws-sonarqube
SonarQube Terraform Module for AWS
blawlor/terraform-provider-auth0
Auth0 Terraform Provider
blawlor/terraform-provider-aws
Terraform AWS provider
blawlor/Zoom-R8-Bitwig-Controller-Script
Zoom R8 Bitwig Controller Script