Pinned Repositories
analysis_portal
bokeh
Interactive Web Plotting for Python
brianlawney.me
Various scripts and files related to personal site
cccb_apps
cccb_apps_portal
Google Cloud-based Django application for "biologist-friendly" genomic analyses. Exposes standardized bioinformatics pipelines via easy-to-use web interface. Includes scalable data transer with Dropbox
circ-rna-plotter
Visualizations for circRNA transcripts compatible with KNIFE algorithm
CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
libcloud
Apache Libcloud is a Python library which hides differences between different cloud provider APIs and allows you to manage different cloud resources through a unified and easy to use API
mev
MultiExperiment Viewer
new_rna_seq
An RNA-seq pipeline for basic differential expression analysis and report generation
blawney's Repositories
blawney/analysis_portal
blawney/bokeh
Interactive Web Plotting for Python
blawney/brianlawney.me
Various scripts and files related to personal site
blawney/cccb_apps
blawney/cccb_apps_portal
Google Cloud-based Django application for "biologist-friendly" genomic analyses. Exposes standardized bioinformatics pipelines via easy-to-use web interface. Includes scalable data transer with Dropbox
blawney/circ-rna-plotter
Visualizations for circRNA transcripts compatible with KNIFE algorithm
blawney/CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
blawney/libcloud
Apache Libcloud is a Python library which hides differences between different cloud provider APIs and allows you to manage different cloud resources through a unified and easy to use API
blawney/new_rna_seq
An RNA-seq pipeline for basic differential expression analysis and report generation
blawney/cloud-transfer-rest
blawney/cnap_v2
blawney/CRISPResso-wrapper
Customized interface to CRISPResso pipeline. For directly processing data from MiSeq
blawney/delivery_app
Cloud application for linking to sequence data
blawney/demux_pipeline
Demultiplex and project structure for automatic processing of sequence data.
blawney/deseq-dge-wdl
WDL workflow for deseq2
blawney/deseq2_model
blawney/disease-simulation
blawney/django-rest-framework
Web APIs for Django. 🎸
blawney/gce_testing
blawney/gene_image_maker
blawney/kaggle-rcic-1st
1st Place Solution for Kaggle Recursion Cellular Image Classification Challenge -- https://www.kaggle.com/c/recursion-cellular-image-classification/
blawney/knife_circ_rna
blawney/local-jupyterlab
Vagrant-based build for creating a Jupyter Lab instance. Includes ability to dynamically create 3-D plots.
blawney/mev-frontend-docker
blawney/mycalc
blawney/netZooPy
netZooPy is a network biology package implemented in Python.
blawney/paired-alignment-and-deseq2-wdl
WDL-based workflow for processing a simple deseq2 contrast from paired-end fastq files
blawney/paired-rna-seq-wdl
blawney/pandas_issue
blawney/single-end-alignment-and-deseq2