Pinned Repositories
blobology
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
braker-docker
Docker container for running braker gene finder
documentation
interproscan-docker
Docker container to run EBI Interproscan
metabarcoding_pipeline
A simple metabarcoding analysis pipeline using usearch.
ncbi-blast-docker
Docker container to run NCBI blast using GNU parallel
nembase4
NEMBASE is a resource for nematode transcriptome analysis, and a research tool for nematode biology, drug discovery and vaccine design.
scripts
Blaxter lab scripts
tardibase-ensembl
utilities
general purpose bioinformatics scripts and utilities
blaxterlab's Repositories
blaxterlab/blobology
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
blaxterlab/scripts
Blaxter lab scripts
blaxterlab/braker-docker
Docker container for running braker gene finder
blaxterlab/interproscan-docker
Docker container to run EBI Interproscan
blaxterlab/ncbi-blast-docker
Docker container to run NCBI blast using GNU parallel
blaxterlab/documentation
blaxterlab/metabarcoding_pipeline
A simple metabarcoding analysis pipeline using usearch.
blaxterlab/nembase4
NEMBASE is a resource for nematode transcriptome analysis, and a research tool for nematode biology, drug discovery and vaccine design.
blaxterlab/bridger-docker
Docker container for running Bridger assembler for transcriptomes
blaxterlab/ngenomes-blast-linkout
provides buttons to link out to SequenceServer from gene/transcript pages
blaxterlab/shortstack-docker
Docker container for running ShortStack for small RNAs
blaxterlab/tardibase-ensembl
blaxterlab/utilities
general purpose bioinformatics scripts and utilities
blaxterlab/ncrnaannot-docker
blaxterlab/ngenomes-ensembl
blaxterlab/ngenomes-search
an Ensembl plugin to provide ngenomes autocomplete and search
blaxterlab/ngenomes-sequenceserver
blaxterlab/prokka-docker
blaxterlab/sandbox
testing gitty stuff. nothing else to see here