bluenote-1577/skani

Issues

• I cannot install skani on my apple silicon

  #37 opened 3 months ago by SilasK
  3

• Triangle output interpretation

  #36 opened 4 months ago by timyerg
  2

• Thomas wang's hash function

  #35 opened 7 months ago by jianshu93
  1

• `--full-matrix` doesn't work with `--sparse`

  #32 opened 7 months ago by apcamargo
  4

• needletail buffer-redux

  #34 opened 7 months ago by jianshu93
  2

• Do not use full header in the output

  #33 opened 8 months ago by apcamargo
  1

• calculate ANI for eukaryotes such as fungi

  #30 opened 9 months ago by neptuneyt
  2

• question on FracMinHash comparison with Minimzer+MinHash

  #27 opened 9 months ago by jianshu93
  1

• (Feature Request) Host the GTDB r214.1 skani database

  #29 opened a year ago by jolespin
  6

• thread 'main' panicked at src/parse.rs:111:46: -l specified file could not be opened properly. Make sure this file exists. Exiting.: Os { code: 2, kind: NotFound, message: "No such file or directory" }

  #28 opened a year ago by jolespin
  2

• help info for use as a library

  #12 opened 2 years ago by jianshu93
  6

• Question: How does skani handle ambiguous ("N") bases?

  #26 opened a year ago by nrminor
  3

• skani outputting low number of comparisons

  #25 opened a year ago by Valentin-Bio
  2

• Question on Markers.bin file.

  #24 opened a year ago by Mohamed-Elmanzalawi
  1

• [Question] Other uses of k-mer sketches created by skani?

  #23 opened a year ago by jolespin
  5

• [Feature request] Many-to-many ANI comparisons

  #22 opened a year ago by jolespin
  6

• Rescue_small question and potential bug

  #21 opened a year ago by AroneyS
  2

• Implementation of Thomas Wang's integer hash function

  #20 opened a year ago by donovan-h-parks
  4

• skani as library restricted to 1 thread

  #19 opened a year ago by AroneyS
  2

• Incorrect version number reported

  #17 opened a year ago by donovan-h-parks
  1

• How to make a Heatmap with skani matrix output

  #18 opened a year ago by Justan6
  4

• ANI values not symmetric?

  #16 opened a year ago by donovan-h-parks
  5

• skani versus bindash

  #15 opened 2 years ago by jianshu93
  5

• Identical sequences have pairwise AF lower than 100%

  #7 opened 2 years ago by apcamargo
  4

• Aligned fraction reported by triangle mode

  #14 opened 2 years ago by donovan-h-parks
  4

• Skani accuracy blow 85% ANI

  #13 opened 2 years ago by jianshu93
  1

• ARM64 support for skani by default

  #6 opened 2 years ago by bluenote-1577
  2

• Questions on AAI verus skaai?

  #3 opened 2 years ago by jianshu93
  6

• skani for eukaryotic genomes

  #5 opened 2 years ago by jianshu93
  7

• support for arm64 neon

  #2 opened 2 years ago by jianshu93
  6