/bm25s

Fast lexical search library implementing BM25 in Python using Scipy (on average 2x faster than Elasticsearch in single-threaded setting)

Primary LanguagePythonMIT LicenseMIT

BM25-Sparse⚡

BM25S is an ultrafast implementation of BM25 in pure Python, powered by Scipy sparse matrices

💻 GitHub 🏠 Homepage 📝 Technical Report 🤗 Blog Post

Welcome to bm25s, a library that implements BM25 in Python, allowing you to rank documents based on a query. BM25 is a widely used ranking function used for text retrieval tasks, and is a core component of search services like Elasticsearch.

It is designed to be:

  • Fast: bm25s is implemented in pure Python and leverage Scipy sparse matrices to store eagerly computed scores for all document tokens. This allows extremely fast scoring at query time, improving performance over popular libraries by orders of magnitude (see benchmarks below).
  • Simple: bm25s is designed to be easy to use and understand. You can install it with pip and start using it in minutes. There is no dependencies on Java or Pytorch - all you need is Scipy and Numpy, and optional lightweight dependencies for stemming.

Below, we compare bm25s with Elasticsearch in terms of speedup over rank-bm25, the most popular Python implementation of BM25. We measure the throughput in queries per second (QPS) on a few popular datasets from BEIR in a single-threaded setting.

comparison

Click to show citation
@misc{bm25s,
      title={BM25S: Orders of magnitude faster lexical search via eager sparse scoring}, 
      author={Xing Han Lù},
      year={2024},
      eprint={2407.03618},
      archivePrefix={arXiv},
      primaryClass={cs.IR},
      url={https://arxiv.org/abs/2407.03618}, 
}

Installation

You can install bm25s with pip:

pip install bm25s

If you want to use stemming for better results, you can install the recommended (but optional) dependencies:

# Install all extra dependencies
pip install bm25s[full]

# If you want to use stemming for better results, you can install a stemmer
pip install PyStemmer

# To speed up the top-k selection process, you can install `jax`
pip install jax[cpu]

Quickstart

Here is a simple example of how to use bm25s:

import bm25s
import Stemmer  # optional: for stemming

# Create your corpus here
corpus = [
    "a cat is a feline and likes to purr",
    "a dog is the human's best friend and loves to play",
    "a bird is a beautiful animal that can fly",
    "a fish is a creature that lives in water and swims",
]

# optional: create a stemmer
stemmer = Stemmer.Stemmer("english")

# Tokenize the corpus and only keep the ids (faster and saves memory)
corpus_tokens = bm25s.tokenize(corpus, stopwords="en", stemmer=stemmer)

# Create the BM25 model and index the corpus
retriever = bm25s.BM25()
retriever.index(corpus_tokens)

# Query the corpus
query = "does the fish purr like a cat?"
query_tokens = bm25s.tokenize(query, stemmer=stemmer)

# Get top-k results as a tuple of (doc ids, scores). Both are arrays of shape (n_queries, k)
results, scores = retriever.retrieve(query_tokens, corpus=corpus, k=2)

for i in range(results.shape[1]):
    doc, score = results[0, i], scores[0, i]
    print(f"Rank {i+1} (score: {score:.2f}): {doc}")

# You can save the arrays to a directory...
retriever.save("animal_index_bm25")

# You can save the corpus along with the model
retriever.save("animal_index_bm25", corpus=corpus)

# ...and load them when you need them
import bm25s
reloaded_retriever = bm25s.BM25.load("animal_index_bm25", load_corpus=True)
# set load_corpus=False if you don't need the corpus

For an example that shows how to quickly index a 2M-documents corpus (Natural Questions), check out examples/index_nq.py.

Flexibility

bm25s provides a flexible API that allows you to customize the BM25 model and the tokenization process. Here are some of the options you can use:

# You can provide a list of queries instead of a single query
queries = ["What is a cat?", "is the bird a dog?"]

# Provide your own stopwords list if you don't like the default one
stopwords = ["a", "the"]

# For stemming, use any function that is callable on each word list
stemmer_fn = lambda lst: [word for word in lst]

# Tokenize the queries
query_token_ids = bm25s.tokenize(queries, stopwords=stopwords, stemmer=stemmer_fn)

# If you want the tokenizer to return strings instead of token ids, you can do this
query_token_strs = bm25s.tokenize(queries, return_ids=False)

# You can use a different corpus for retrieval, e.g., titles instead of full docs
titles = ["About Cat", "About Dog", "About Bird", "About Fish"]

# You can also choose to only return the documents and omit the scores
results = retriever.retrieve(query_token_ids, corpus=titles, k=2, return_as="documents")

# The documents are returned as a numpy array of shape (n_queries, k)
for i in range(results.shape[1]):
    print(f"Rank {i+1}: {results[0, i]}")

Memory Efficient Retrieval

bm25s is designed to be memory efficient. You can use the mmap option to load the BM25 index as a memory-mapped file, which allows you to load the index without loading the full index into memory. This is useful when you have a large index and want to save memory:

# Create a BM25 index
# ...

# let's say you have a large corpus
corpus = [
    "a very long document that is very long and has many words",
    "another long document that is long and has many words",
    # ...
]
# Save the BM25 index to a file
retriever.save("bm25s_very_big_index", corpus=corpus)

# Load the BM25 index as a memory-mapped file, which is memory efficient
# and reduce overhead of loading the full index into memory
retriever = bm25s.BM25.load("bm25s_very_big_index", mmap=True)

For an example of how to use retrieve using the mmap=True mode, check out examples/retrieve_nq.py.

Variants

You can use the following variants of BM25 in bm25s (see Kamphuis et al. 2020 for more details):

  • Original implementation (method="robertson") - we set idf>=0 to avoid negatives
  • ATIRE (method="atire")
  • BM25L (method="bm25l")
  • BM25+ (method="bm25+")
  • Lucene (method="lucene")

By default, bm25s uses method="lucene", which is Lucene's BM25 implementation (exact version). You can change the method by passing the method argument to the BM25 constructor:

# The IR book recommends default values of k1 between 1.2 and 2.0, and b=0.75
retriever = bm25s.BM25(method="robertson", k1=1.5, b=0.75)

# For BM25+, BM25L, you need a delta parameter (default is 0.5)
retriever = bm25s.BM25(method="bm25+", delta=1.5)

# You can also choose a different "method" for idf, while keeping the default for the rest
# for example, this is equivalent to rank-bm25 when `epsilon=0`
retriever = bm25s.BM25(method="atire", idf_method="robertson")
# and this is equivalent to bm25-pt
retriever = bm25s.BM25(method="atire", idf_method="lucene")

Hugging Face Integration

bm25 can naturally work with Hugging Face's huggingface_hub, allowing you to load and save to the model hub. This is useful for sharing BM25 indices and using community models.

First, make sure you have a valid access token for the Hugging Face model hub. This is needed to save models to the hub, or to load private models. Once you created it, you can add it to your environment variables (e.g. in your .bashrc or .zshrc):

export HUGGING_FACE_HUB_TOKEN="hf_..."

Now, let's install the huggingface_hub library:

pip install huggingface_hub

Let's see how to use BM25SHF.save_to_hub to save a BM25 index to the Hugging Face model hub:

import os
import bm25s
from bm25s.hf import BM25HF

# Create a BM25 index
retriever = BM25HF()
# Create your corpus here
corpus = [
    "a cat is a feline and likes to purr",
    "a dog is the human's best friend and loves to play",
    "a bird is a beautiful animal that can fly",
    "a fish is a creature that lives in water and swims",
]
corpus_tokens = bm25s.tokenize(corpus)
retriever.index(corpus_tokens)

# Set your username and token
user = "your-username"
token = os.environ["HF_TOKEN"]
retriever.save_to_hub(f"{user}/bm25s-animals", token=token, corpus=corpus)
# You can also save it publicly with private=False

Then, you can use the following code to load a BM25 index from the Hugging Face model hub:

import bm25s
from bm25s.hf import BM25HF

# Load a BM25 index from the Hugging Face model hub
user = "your-username"
retriever = BM25HF.load_from_hub(f"{user}/bm25s-animals")

# you can specify revision and load_corpus=True if needed
retriever = BM25HF.load_from_hub(
    f"{user}/bm25s-animals", revision="main", load_corpus=True
)

# if you want a low-memory usage, you can load as memory map with `mmap=True`
retriever = BM25HF.load_from_hub(
    f"{user}/bm25s-animals", load_corpus=True, mmap=True
)

# Query the corpus
query = "does the fish purr like a cat?"

# Tokenize the query
query_tokens = bm25s.tokenize(query)

# Get top-k results as a tuple of (doc ids, scores). Both are arrays of shape (n_queries, k)
results, scores = retriever.retrieve(query_tokens, k=2)

For a complete example, check out:

Comparison

Here are some benchmarks comparing bm25s to other popular BM25 implementations. We compare the following implementations:

  • bm25s: Our implementation of BM25 in pure Python, powered by Scipy sparse matrices.
  • rank-bm25 (Rank): A popular Python implementation of BM25.
  • bm25_pt (PT): A Pytorch implementation of BM25.
  • elasticsearch (ES): Elasticsearch with BM25 configurations.

OOM means the implementation ran out of memory during the benchmark.

Throughput (Queries per second)

We compare the throughput of the BM25 implementations on various datasets. The throughput is measured in queries per second (QPS), on a single-threaded Intel Xeon CPU @ 2.70GHz (found on Kaggle). For BM25S, we take the average of 10 runs. Instances exceeding 60 queries/s are in bold.

Dataset BM25S Elastic BM25-PT Rank-BM25
arguana 573.91 13.67 110.51 2
climate-fever 13.09 4.02 OOM 0.03
cqadupstack 170.91 13.38 OOM 0.77
dbpedia-entity 13.44 10.68 OOM 0.11
fever 20.19 7.45 OOM 0.06
fiqa 507.03 16.96 20.52 4.46
hotpotqa 20.88 7.11 OOM 0.04
msmarco 12.2 11.88 OOM 0.07
nfcorpus 1196.16 45.84 256.67 224.66
nq 41.85 12.16 OOM 0.1
quora 183.53 21.8 6.49 1.18
scidocs 767.05 17.93 41.34 9.01
scifact 952.92 20.81 184.3 47.6
trec-covid 85.64 7.34 3.73 1.48
webis-touche2020 60.59 13.53 OOM 1.1

More detailed benchmarks can be found in the bm25-benchmarks repo.

Disk usage

bm25s is designed to be lightweight. This means the total disk usage of the package is minimal, as it only requires wheels for numpy (18MB), scipy (37MB), and the package itself is less than 100KB. After installation, the full virtual environment takes more space than rank-bm25 but less than pyserini and bm25_pt:

Package Disk Usage
venv (no package) 45MB
rank-bm25 99MB
bm25s (ours) 479MB
bm25_pt 5346MB
pyserini 6976MB
elastic 1183MB
Show Details

The disk usage of the virtual environments is calculated using the following command:

$ du -s *env-* --block-size=1MB
6976    conda-env-pyserini
5346    venv-bm25-pt
479     venv-bm25s
45      venv-empty
99      venv-rank-bm25

For pyserini, we use the recommended installation with conda environment to account for Java dependencies.

Optimized RAM usage

bm25s allows considerable memory saving through the use of memory-mapping, which allows the index to be stored on disk and loaded on demand.

When testing with 6 arbitrary queries with an index built with MS MARCO (8.8M documents, 300M+ tokens), we have the following:

Method Load Index (s) Retrieval (s) RAM usage (GB)
Memory-mapped 0.62 0.18 0.90
In-memory 11.41 0.74 10.56

When you run bm25s on 1000 queries on the Natural Questions dataset (2M+ documents), the memory usage is over 50% lower than the in-memory version with trivial difference in speed. You can find more information in the GitHub repository.

Citation

If you use bm25s in your work, please use the following bibtex:

@misc{bm25s,
      title={BM25S: Orders of magnitude faster lexical search via eager sparse scoring}, 
      author={Xing Han Lù},
      year={2024},
      eprint={2407.03618},
      archivePrefix={arXiv},
      primaryClass={cs.IR},
      url={https://arxiv.org/abs/2407.03618}, 
}