Pinned Repositories
aml31
batcaver
Implements BATCAVE: Bayesian Analysis Tools for Context-Aware Variant Evaluation
bmannakee.github.io
personal site
broom
Convert statistical analysis objects from R into tidy format
caller_paper
Repository for writing up empirical variant caller
diln
This implements the discrete infinite logistic normal, a Bayesian nonparametric topic model that finds correlated topics.
dissertation_proposal
Proposal repository
eval_tracksig
mapexr
mstumorsim
Simulate a tumor with realistic clonality and mutation spectrum
bmannakee's Repositories
bmannakee/batcaver
Implements BATCAVE: Bayesian Analysis Tools for Context-Aware Variant Evaluation
bmannakee/mapexr
bmannakee/aml31
bmannakee/bmannakee.github.io
personal site
bmannakee/broom
Convert statistical analysis objects from R into tidy format
bmannakee/caller_paper
Repository for writing up empirical variant caller
bmannakee/diln
This implements the discrete infinite logistic normal, a Bayesian nonparametric topic model that finds correlated topics.
bmannakee/dissertation_proposal
Proposal repository
bmannakee/eval_tracksig
bmannakee/mstumorsim
Simulate a tumor with realistic clonality and mutation spectrum
bmannakee/fsdl-text-recognizer-project
Full Stack Deep Learning Bootcamp Project (Public)
bmannakee/git_demo_iplant
Repository for gapminder processing at IPlant
bmannakee/lymphangioma
bmannakee/Math574M
bmannakee/NAB
The Numenta Anomaly Benchmark
bmannakee/sig_tracker
Tracks Signature evolution
bmannakee/signature_evolution
bmannakee/Stat571A
Code for project in Stat 571A
bmannakee/Stat571B
Files for stat 571B
bmannakee/talks
bmannakee/tumor_experiment
A package to set up simulation experiments with simulation using the VarSim package from Roche
bmannakee/tumorsim
bmannakee/UA_beamer_slides
University of Arizona themed beamer slides for presentations
bmannakee/vcNumerics
Numerical analysis of the precision-recall surface for depth, prior, and threshold distributions.