Documentation for analyses of genomic RADseq data for Geleznowia (Rutaceae)
This repository contains the scripts used for running all genomic analyses in
Anderson et al. (2023) "Using RADseq to resolve species boundaries in a morphologically complex group of yellow-flowered shrubs (Geleznowia, Rutaceae)"
Scripts are located in the scripts folder, and R markdown files are in the rmd folder
Some additional files that reflect sample and parameter choices are included in the folder files
Raw sequencing data is available from https://data.bioplatforms.com/organization/bpa-plants under dataset 83666
The step by step process for processing the raw data through to end results can be followed in Geleznowia_analyses.md