Pinned Repositories
AdapterAnalysis
AdapterTools
Tools for optimizing and QCing adapter-calling results for PacBio data
BarcodeAnalysis
A python library of tools and prototypes for analyzing barcoded PacBio barcode data
BioSharp
An F# library for manipulating common biological data types
HlaTools
A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing
LociAnalysis
Reference-Aware Long Amplicon Analysis for SMRT Sequencing
LociTools
Tools to support Long Amplicon Analysis for SMRT Sequencing
NoAmpTools
Tools for QC-ing and Plotting outputs from PacBio's AmpFree protocol
PhasingTools
A python library for phasing PacBio sequence amplicons
SRSLI
Successively Refined alignment after Sparse Local Indexing
bnbowman's Repositories
bnbowman/HlaTools
A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing
bnbowman/LociAnalysis
Reference-Aware Long Amplicon Analysis for SMRT Sequencing
bnbowman/BarcodeAnalysis
A python library of tools and prototypes for analyzing barcoded PacBio barcode data
bnbowman/NoAmpTools
Tools for QC-ing and Plotting outputs from PacBio's AmpFree protocol
bnbowman/AdapterTools
Tools for optimizing and QCing adapter-calling results for PacBio data
bnbowman/LociTools
Tools to support Long Amplicon Analysis for SMRT Sequencing
bnbowman/AdapterAnalysis
bnbowman/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
bnbowman/BaseModsTools
Tools for optimizing and QCing performance of BaseMods and related tools on PacBio Data
bnbowman/bauhaus
minimal tertiary analysis for PacBio
bnbowman/bauhaus2
For testing only
bnbowman/blasr
BLASR: The PacBio® long read aligner
bnbowman/blasr_libcpp
bnbowman/ccscheck
Evaluate quality, model fit, QV calibration and all else CCS
bnbowman/DragenFastQcPlotter
Stand-alone plotting tools for plotting DRAGEN-FastQc results
bnbowman/glfw
A multi-platform library for OpenGL, OpenGL ES, Vulkan, window and input
bnbowman/Hazel
Hazel Engine
bnbowman/HillReporter
A tool for rapidly scraping press-releases from congressional web resources
bnbowman/imgui
Dear ImGui: Bloat-free Immediate Mode Graphical User interface for C++ with minimal dependencies
bnbowman/MultiMultiQC
Disaggregate results from bioinformatics analyses across many samples into separate MultiQC reports
bnbowman/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
bnbowman/PacBioFileFormats
Specifications for PacBio® native file formats
bnbowman/pbbarcodeJr
A simplified, stream-lined version of PBbarcode for testing purposes
bnbowman/pbbridgemapper2
Summarize split alignments
bnbowman/pbccs
PacBio circular consensus sequencing
bnbowman/pbsmrtpipe
PacBio Workflow Engine
bnbowman/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
bnbowman/RustRosalind
Coding practice in Rust using the Rosalind problem set
bnbowman/SimHammer
Tools for simulating Warhammer 40k units
bnbowman/SpatialTools
Tools for use with spatial analysis bioinformatics pipelines