/Ssuis_genomic_epidemiology

Repo with Snakemake pipeline to analyse genomic epidemiology data of European Streptococcus suis whole-genome sequencing data

Primary LanguagePython

Genomic epidemiology of zoonotic S. suis in Europe

This repo contains a Snakemake pipeline used for a preliminary analysis of WGS data of S. suis isolates associated with human disease, collected from European reference laboratories.

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