bobbai00/SequenceAlignmentBenchmark

CSCI 570 - final project

Sequence Alignment Benchmark

Environment

1. Platform: Linux/MacOS
2. JDK Version: java 1.8

Getting Started

1. Enter the project's root directory

2. To run Basic algorithm, use basic.sh as follows:

bash basic.sh $(InputFilePath) $(OutputFilePath)

For example:

bash basic.sh SampleTestCases/input2.txt ./output.txt

3. To run Efficient Algorithm, use Efficient.sh as follows:

bash efficient.sh $(InputFilePath) $(OutputFilePath)

For example:

bash efficient.sh SampleTestCases/input2.txt ./output.txt