/clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Primary LanguageR

clusterProfiler

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Authors

Guangchuang YU, School of Public Health, The University of Hong Kong http://ygc.name

Citation

Please cite the following article when using clusterProfiler:

Yu G, Wang L, Han Y and He Q. 
clusterProfiler: an R package for comparing biological themes among gene clusters.
OMICS: A Journal of Integrative Biology, 2012, 16(5):284-287.

URL: http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118

License

All source code is copyright, under the Artistic-2.0 License. For more information on Artistic-2.0 License see http://opensource.org/licenses/Artistic-2.0

Installation

To install:

  • the latest released version: biocLite("clusterProfiler")
  • the latest development version: install_github(c("DOSE", "clusterProfiler"), "GuangchuangYu")

Find out more at http://www.bioconductor.org/packages/release/bioc/html/clusterProfiler.html and check out the vignette.

Bugs/Feature requests