Pinned Repositories
AB_QTL_Mapping
AB_QTL_Mapping contains the R codes used for the analysis in the publication Mathew et al. (2021; G3): https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab105/6211194
AdaptiveMCMC
AdaptiveMCMC contains MATLAB code for the adaptiveMCMC method presented in Mathew et al. (2012; Heredity):: https://www.nature.com/articles/hdy201235
Bayesian-Multilocus
Bayesian-Multilocus contains R code for Bayesian Multilocus Estimation of two and three way epistasis presented in Mathew et al. (2018;Genetics):: https://www.genetics.org/content/208/2/525
Coursera-project
Python scripts used for the coursera project.
F4-sim
C codes to simulate a F4 population based on infinite locus model and for the Bayesian estimation of breeding values. This was developed as a part of my PhD thesis: https://bonndoc.ulb.uni-bonn.de/xmlui/handle/20.500.11811/5102
INLA-CV
INLA-CV contains R code for Integrated nested Laplace approximation (INLA) inference presented in Mathew et al. (2015; Molecular Breeding):: https://link.springer.com/article/10.1007/s11032-015-0248-y
MET-analysis
MET-analysis contains R code used in Mathew et al. (2018; PLOS ONE):: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0201181
Multivariate-INLA
Multivariate INLA contains R code for the Integrated nested Laplace approximation inference (INLA) of multivariate mixed model presented in Mathew et al. (2016; Theoretical and Applied Genetics):: https://link.springer.com/article/10.1007%2Fs00122-015-2622-x
Novel-GBLUP
Novel-GBLUP contains R code for the calculation of linkage-disequilibrium corrected genomic relationship matrix presented in Mathew et al. (2018; Heredity):: https://www.nature.com/articles/s41437-017-0023-4
R-Course
R-Course contains the data sets and materials of the course "R Programming" given as a part of the graduate school at university of Bonn
bobymathew's Repositories
bobymathew/AdaptiveMCMC
AdaptiveMCMC contains MATLAB code for the adaptiveMCMC method presented in Mathew et al. (2012; Heredity):: https://www.nature.com/articles/hdy201235
bobymathew/Bayesian-Multilocus
Bayesian-Multilocus contains R code for Bayesian Multilocus Estimation of two and three way epistasis presented in Mathew et al. (2018;Genetics):: https://www.genetics.org/content/208/2/525
bobymathew/Multivariate-INLA
Multivariate INLA contains R code for the Integrated nested Laplace approximation inference (INLA) of multivariate mixed model presented in Mathew et al. (2016; Theoretical and Applied Genetics):: https://link.springer.com/article/10.1007%2Fs00122-015-2622-x
bobymathew/AB_QTL_Mapping
AB_QTL_Mapping contains the R codes used for the analysis in the publication Mathew et al. (2021; G3): https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab105/6211194
bobymathew/Coursera-project
Python scripts used for the coursera project.
bobymathew/F4-sim
C codes to simulate a F4 population based on infinite locus model and for the Bayesian estimation of breeding values. This was developed as a part of my PhD thesis: https://bonndoc.ulb.uni-bonn.de/xmlui/handle/20.500.11811/5102
bobymathew/INLA-CV
INLA-CV contains R code for Integrated nested Laplace approximation (INLA) inference presented in Mathew et al. (2015; Molecular Breeding):: https://link.springer.com/article/10.1007/s11032-015-0248-y
bobymathew/MET-analysis
MET-analysis contains R code used in Mathew et al. (2018; PLOS ONE):: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0201181
bobymathew/Novel-GBLUP
Novel-GBLUP contains R code for the calculation of linkage-disequilibrium corrected genomic relationship matrix presented in Mathew et al. (2018; Heredity):: https://www.nature.com/articles/s41437-017-0023-4
bobymathew/R-Course
R-Course contains the data sets and materials of the course "R Programming" given as a part of the graduate school at university of Bonn
bobymathew/RPharma2020
R/Pharma Conference 2020. Repository for the workshop "Artificial Neural Networks in R with Keras and TensorFlow" by Leon Eyrich Jessen
bobymathew/RPharma2021-Workshop
Materials for the safetyGraphics R Phama 2021 Workshop
bobymathew/StatsWithJuliaBook