Parse Newick
aesse opened this issue · 1 comments
Encountered issue with user trying to pass in a Newick string with labels that contained brackets '()'
bnkit can't properly parse the Newick string if node labels include brackets
Possibly add catch around PhyloTree.loadNewick() in loadData() to highlight the naming requirements?
This sounds like (a) an inherent problem with the Newick format and (b) something that cannot be caught. The problem must be with programs that allow the user to type in such names.
/Mikael
On 5 Jan 2016, at 2:32 PM, aesse <notifications@github.commailto:notifications@github.com> wrote:
Encountered issue with user trying to pass in a Newick string with labels that contained brackets '()'
bnkit can't properly parse the Newick string if node labels include brackets
Possibly add catch around PhyloTree.loadNewick() in loadData() to highlight the naming requirements?
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Mikael Bodén | Group Leader Bioinformatics | Associate Professor
School of Chemistry and Molecular Biosciences (Faculty of Science)
The University of Queensland | Brisbane QLD 4072 Australia
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