Pinned Repositories
atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
biocondastats
compile bioconda usage statistics
bixtools
cwl-v1.2
Released CWL v1.2.1 specification
kf-alignment-workflow
:microscope: Alignment workflow for Kids-First DRC
composer
Visual and code editor for Common Workflow Language
sbpack
Command line utility to pack and upload/download CWL to/from SB powered platform
okAPI
Recipes and Tutorials for Automation & Extension on the CGC and SBPLAT platforms
sevenbridges-cwl-draft2-upgrader
Command line tool to upgrade sbg:draft2 to CWL v1.0.
bogdang989's Repositories
bogdang989/atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
bogdang989/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bogdang989/biocondastats
compile bioconda usage statistics
bogdang989/bixtools
bogdang989/bunny
Reproducible Analyses for Bioinformatics - Java
bogdang989/common-workflow-language
Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊
bogdang989/composer
Visual and code editor for Common Workflow Language
bogdang989/cwl-svg
A library for generating an interactive SVG visualization of CWL workflows
bogdang989/cwl-ts
Typescript data model for Common Workflow Language
bogdang989/cwl-v1.1
In development version of the future CWL v1.1 specification
bogdang989/cwl-v1.2
Current development CWL v1.2 specification
bogdang989/cwltool
Common Workflow Language reference implementation
bogdang989/gatk4-somatic-with-preprocessing
bogdang989/gdc-dnaseq-cwl
CWL for GDC DNASeq workflows
bogdang989/image_registry_test
bogdang989/Import-CWL-to-SevenBridges
Import CWL to SevenBridges
bogdang989/kf-alignment-workflow
bogdang989/kf-workflows
Bioinformatics workflows for Kids First DRC
bogdang989/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
bogdang989/sbg_dockstore_tools
bogdang989/sevenbridges-python
SevenBridges Python Api bindings
bogdang989/test_bcbio_cwl
Test workflows, run scripts and data for bcbio Common Workflow Language integration
bogdang989/topmed-workflows
a place for topmed workflows
bogdang989/whaaaaat
Inquirer.js port to Python (https://www.npmjs.com/package/inquirer). people blame me for staling this project. I do not have time to work on this right now - whaaaaat do you want me to do? take it offline?