jobError in sumstat$Z[qc$flip] = -1 * sumstat$Z[qc$flip] :
Closed this issue · 2 comments
jameskozubek commented
Hello, I got this error. any advice?
(myenv) jim@bashful:/mnt/BIOINFX/fusion_twas-master$ Rscript FUSION.assoc_test.R --sumstats /mnt/BIOINFX/plm_automation/markers-data/markers-datasets/HS-IBD-5-3/imputed.cleaned.gwas1.sumstat.sumstat --weights ./WEIGHTS/GTEx.Colon_Sigmoid.pos --weights_dir ./WEIGHTS/ --ref_ld_chr ./LDREF/1000G.EUR. --chr 1 --out IBD-5-3-Colon_Sigmoid1
jobError in sumstat$Z[qc$flip] = -1 * sumstat$Z[qc$flip] :
NAs are not allowed in subscripted assignments
Execution halted
quattro commented
Hi @jameskozubek , can you provide a bit more information? Do you see any NAs in the imputed.cleaned.gwas1.sumstat.sumstat Z scores?