Pinned Repositories
adapter_benchmark
Benchmarking adapter and quality trimming tools
adventofcode
Toying with the problems from AdventOfCode.com
fbs_pandas_example
Small example with pandas in an fbs application
merge_taxonomic_classifications
Merge Kaiju, Kraken, and CLARK-S classifications of metagenomic reads
phaster_scripts
Small utility script to submit genomes to PHASTER for phage detection
tcup
Typing and Characterization using Proteotyping
BACTpipe
BACTpipe: An assembly and annotation pipeline for bacterial genomics
sm3
Simple Snakemake example
stag-mwc
StaG Metagenomic Workflow Collaboration
boulund's Repositories
boulund/phaster_scripts
Small utility script to submit genomes to PHASTER for phage detection
boulund/adapter_benchmark
Benchmarking adapter and quality trimming tools
boulund/TIGRFAM_scripts
Small utility scripts to work with TIGRFAMs
boulund/adventofcode
Toying with the problems from AdventOfCode.com
boulund/tcup
Typing and Characterization using Proteotyping
boulund/airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
boulund/amrplusplus_v2
MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data
boulund/blat-parser
boulund/c3se-run-parallel
boulund/human_removal_benchmark
Comparing methods for removing human sequences from metagenomes
boulund/krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
boulund/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
boulund/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
boulund/nCoV_Meta
Pipeline for HCoV-19 genome analyzing
boulund/proteinvoids-langlet
An exact method for finding voids within macromolecules using an implementation of Langlet's method (http://scripts.iucr.org/cgi-bin/paper?S0021889877012734)
boulund/proteotyping
boulund/proteotyping-AR
boulund/proteotyping-bacterial-cultures-mixtures
boulund/proteotyping-in-silico
boulund/proteotyping-leave-one-out
boulund/proteotyping-py27
boulund/q2-sidle
A QIIME 2 implementation of SMURF
boulund/query-ratsit
boulund/restic-backup
Simple Restic backup configuration for Debian-based home server
boulund/setop
Set operations on text files
boulund/stag-mwc_test_data
Test data for StaG-mwc
boulund/SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data
boulund/tcup-mixes
boulund/tparty
Proteotyping workflow using TCUP
boulund/ttt-genomes-comparison