Pinned Repositories
abifpy
Module for reading ABI Sanger sequencing trace files
biopython
Python library for biological data processing
biostuff
Collection of scripts for working with various bio-related data
cookiecutter-scala
Opinionated cookiecutter template for a Scala project
crimson
Bioinformatics tool outputs converter to JSON or YAML
dotfiles
Settings and configurations for a command line environment that feels like home.
fsnviz
Tool for plotting gene fusion events using Circos.
neon
Feed reader suite
pytest-pipeline
Pytest plugin for functional testing of data analysis pipelines
volt
Extensible static site generator
bow's Repositories
bow/volt
Extensible static site generator
bow/abifpy
Module for reading ABI Sanger sequencing trace files
bow/crimson
Bioinformatics tool outputs converter to JSON or YAML
bow/pytest-pipeline
Pytest plugin for functional testing of data analysis pipelines
bow/fsnviz
Tool for plotting gene fusion events using Circos.
bow/biopython
Python library for biological data processing
bow/dotfiles
Settings and configurations for a command line environment that feels like home.
bow/biostuff
Collection of scripts for working with various bio-related data
bow/cookiecutter-scala
Opinionated cookiecutter template for a Scala project
bow/align
sequence alignment. global, local, glocal.
bow/neon
Feed reader suite
bow/virtual-clusters
Recipes for setting up a local virtual cluster using specific scheduling engines.
bow/bioconda-recipes
Conda recipes for the bioconda channel.
bow/bioinformatics
Tools for bioinformatics
bow/bow
bow/cookiecutter-ansible-vagrant
Cookiecutter template for deployment repos using Ansible and Vagrant
bow/cookiecutter-snakemake-wrapper
Cookiecutter template for writing Snakemake wrappers
bow/docker_ubuntu_drmaa_conda
For building a docker image on Ubuntu with Grid Engine, DRMAA, and miniconda installed.
bow/godev
Helper functions for Go development
bow/gtetools
Command line tools for working with various gene annotation formats.
bow/multimap
bow/poc_biopy
Proof of concept of an alternative Biopython distribution
bow/poetry2nix
Convert poetry projects to nix automagically [maintainer=@adisbladis,@cpcloud]
bow/python-markdown2
markdown2: A fast and complete implementation of Markdown in Python
bow/rattle
Opinionated utilities for Snakemake pipelines.
bow/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
bow/singularity-vim
Vim syntax files for Singularity recipe files
bow/talks
bow/track
Provides easy read/write access to genomic tracks
bow/wf
Wait for TCP servers to be ready