Pinned Repositories
2024_SIO278_collab
Code and data for the 2024 Winter SIO 278 marine microbiology seminar
BAMBI
initial commit
barrow_metagenome_scripts
Custom script accompanying Bowman and Deming, 2014, FEMS Microbial Ecology
cold_ah
custom scripts accompanying Bowman and Deming, 2014, BMC Genomics
cold_HGT
code for psychrophile HGT project
iMAGine
iMAGine - In silico Metagenomics Pipeline
PAL_MCM_comparison
scripts and data files for PAL MCM comparison project
palmer_timeseries
ESOMs and custom R code for Bowman et al. 2016, ISMEJ
papara_nt
new codebase of the PaPaRa algorithm
paprica
paprica - PAthway PRediction by phylogenetIC plAcement
bowmanjeffs's Repositories
bowmanjeffs/paprica
paprica - PAthway PRediction by phylogenetIC plAcement
bowmanjeffs/BAMBI
initial commit
bowmanjeffs/2024_SIO278_collab
Code and data for the 2024 Winter SIO 278 marine microbiology seminar
bowmanjeffs/barrow_metagenome_scripts
Custom script accompanying Bowman and Deming, 2014, FEMS Microbial Ecology
bowmanjeffs/cold_ah
custom scripts accompanying Bowman and Deming, 2014, BMC Genomics
bowmanjeffs/cold_HGT
code for psychrophile HGT project
bowmanjeffs/iMAGine
iMAGine - In silico Metagenomics Pipeline
bowmanjeffs/PAL_MCM_comparison
scripts and data files for PAL MCM comparison project
bowmanjeffs/palmer_timeseries
ESOMs and custom R code for Bowman et al. 2016, ISMEJ
bowmanjeffs/papara_nt
new codebase of the PaPaRa algorithm
bowmanjeffs/pier_sampler_code
initial commit
bowmanjeffs/pplacer
Phylogenetic placement and downstream analysis
bowmanjeffs/rdl-share-snippets
bowmanjeffs/ROPE
ROPE-RDP classification of paprica edges
bowmanjeffs/shared_scripts
Stable shared bioinformatics scripts
bowmanjeffs/SIO121
Files for SIO121 Biology of the Cryosphere
bowmanjeffs/SOAP
Scripts for modeling the production and concentration of superoxide from the MCLA chemiluminescence assay