Pinned Repositories
ansrs-schema
LinkML schema/data model for ANSRS
bkbit
Brain Knowledge Interaction Toolkit
human-brain-cell-atlas_v1_neurons
Human Brain Cell Atlas v1.0 Taxonomy (Neurons) (CS202210140), facilitated by Taxonomy Development Tools.
human-brain-cell-atlas_v1_non-neuronal
Human Brain Cell Atlas Taxonomy v1.0 (Non-neuronal) (CS202210140), facilitated by Taxonomy Development Tools.
human-neocortex-middle-temporal-gyrus
Cellular and molecular characterization of human cortical cytoarchitecture. Dissection: Middle temporal gyrus.Facilitated by Taxonomy Development Tools.
kbhub
Infrastructure and code for the knowledgebase jupyterhub
metadata-schemas
A repository for BICAN metadata schemas and their development.
models
BICAN data models
taxonomy-development-tools
Tools to build and edit Cell Annotation Schema taxonomies.
techniques_ontology
BICAN's Repositories
brain-bican/metadata-schemas
A repository for BICAN metadata schemas and their development.
brain-bican/models
BICAN data models
brain-bican/taxonomy-development-tools
Tools to build and edit Cell Annotation Schema taxonomies.
brain-bican/ansrs-schema
LinkML schema/data model for ANSRS
brain-bican/bkbit
Brain Knowledge Interaction Toolkit
brain-bican/human-brain-cell-atlas_v1_neurons
Human Brain Cell Atlas v1.0 Taxonomy (Neurons) (CS202210140), facilitated by Taxonomy Development Tools.
brain-bican/human-brain-cell-atlas_v1_non-neuronal
Human Brain Cell Atlas Taxonomy v1.0 (Non-neuronal) (CS202210140), facilitated by Taxonomy Development Tools.
brain-bican/human-neocortex-middle-temporal-gyrus
Cellular and molecular characterization of human cortical cytoarchitecture. Dissection: Middle temporal gyrus.Facilitated by Taxonomy Development Tools.
brain-bican/kbhub
Infrastructure and code for the knowledgebase jupyterhub
brain-bican/techniques_ontology
brain-bican/bican_application_ontology
Application ontology for BRAIN Initiative Cell Atlas Network (BICAN)
brain-bican/CCN2
Developing a successor to the CCN taxonomy system
brain-bican/design-documents
brain-bican/developing_human_brain_atlas_ontology
An application ontology built by combining ontologised versions of the Allen Institute Developing Human Brain Atlas (DHBA) StructureGraph mapped to Uberon.
brain-bican/developing_mouse_brain_atlas_ontology
An application ontology built by combining ontologised versions of the Allen Institute Developing Mouse Brain Atlas (DMBA) StructureGraph mapped to Uberon.
brain-bican/human_brain_atlas_ontology
An application ontology built by combining ontologised versions of the Allen Institute Human Brain Atlas (HBA) StructureGraph mapped to Uberon.
brain-bican/knowledgegraph-jsonld-files
some default
brain-bican/Metadata-Huddle-2023
brain-bican/mouse_brain_atlas_ontology
An application ontology built by combining ontologised versions of the Allen Institute Mouse Brain Atlas (MBA) StructureGraph mapped to Uberon.
brain-bican/primate_brain_atlas_ontology
An application ontology built by combining ontologised versions of the Allen Institute Primate Brain Atlas (PBA) StructureGraph mapped to Uberon.
brain-bican/purl.brain-bican.org
A system for managing BICAN PURLs
brain-bican/purple-boxes
A repository for sharing purple box diagrams for BICAN
brain-bican/spatial-transcriptomics-segmentation
brain-bican/taxonomy-development-tools-actions
Taxonomy Development Tools utility operations.
brain-bican/tdt-cellxgene-crawler
Generates taxonomy repositories for Taxonomy Development Tools based on datasets published via CellXGene.