brain-microstructure-exploration-tools/abcd-noddi-tbss-experiments

Add population template step

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Add population template step.

  • We first need to have chosen a registration method.
  • The input should be a set of images, of whatever modality the registration method wants.
  • The output should be a set of warps to a common space. The warps will be applied to various scalar images (FA for generating a white matter skeleton for TBSS, and NODDI images for projection to the skeleton). So the format of the warps is up to us -- it should be whatever is most convenient for later applying the warps to scalar images.

Before this task begins, we need: A registration method, either something we create here or something else. There could be a placeholder "basic" method that doesn't need GPU.

Follow this dtitk population template builder to help create a generic one or one that uses whatever our preferred registration method is.