dmri
There are 40 repositories under dmri topic.
dPys/PyNets
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
MIC-DKFZ/MITK-Diffusion
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
connectomicslab/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
SlicerDMRI/whitematteranalysis
White matter tractography clustering and more...
SlicerDMRI/ORG-Atlases
ORG Fiber Clustering White Matter Atlas
carpentries-incubator/SDC-BIDS-dMRI
Introduction to dMRI
muscbridge/PyDesigner
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
treanus/KUL_NIS
KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.
3Tissue/MRtrix3Tissue
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
KUL-Radneuron/KUL_FWT
Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator
lorifranke/FiberStars
Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.
scil-vital/tractolearn
Tractography learning
christiennedamatac/fixel_based_analysis
Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"
Hyedryn/elikopy
ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.
brain-microstructure-exploration-tools/abcd-registration-experiments
experiments with diffusion image registration
christiennedamatac/tracula
Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"
multinetlab-amsterdam/data_preprocessing
This repo contains preprocessing scripts used in the lab, organized (mainly) by imaging modality.
TylerSpears/fenri
FENRI (Fiber Orientations from Explicit Neural Representations) Implementation Repository
brain-microstructure-exploration-tools/abcd-noddi-tbss-experiments
experiments with neuroimaging pipelines that use noddi and tbss
brightside51/dMRI_cGen
MSc Thesis on Conditional dMRI Generative AI Models and their applicability in the decreasing scan acquisition times and bettering of patient's quality of life.
christiennedamatac/longitudinal_tract_based_spatial_statistics
Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"
DelinteNicolas/TractAnalysis
Analysis of the structural connectivity of diffusion data
GewoonMaarten/spherical-dmri-conv
Sub-sampling on multi-dimensional diffusion MRI with rotation equivariance.
JonGant/DWIS
Diffusion Weighted Image Simulator
SlicerDMRI/tutorials
SlicerDMRI tutorial repository
zhangjb35/jinbo_brain_book
Record all learned knowledge of MRI
christiennedamatac/sps_dmri
Scripts related to "Exploring the relationships between sensory processing sensitivity, decision-making, and brain white matter microstructure"
mdausort/TFE22-540
Codes of my master thesis
micerr/Epilepsy-dMRI-VNS
Assessing microstructural brain differences in epileptic patients with vagus nerve stimulation via diffusion MRI, tractography and machine learning
oscarjalnefjord/ivim
An end-to-end python package for intravoxel incoherent motion (IVIM) analysis of diffusion MRI data
umn-milab/qmri-ald
Image analysis pipelines of qunatitative MRI (qMRI), including diffusion MRI (dMRI), in patients with adrenoleukodystrophy (ALD)
brainhack-school2023/subramani_Romy_project
This repository contains the code and documentation for the Brainhack School project on exploring the structure-function coupling and segregation analysis in video-watching electroencephalography (EEG) data. The project aims to investigate how the electrophysiological activity during video-watching is related to the underlying anatomical structure
servindc/ratcortex-dwi-streams
Scripts to process dMRI volumes and create cortical streamlines in rat data.
SlicerDMRI/wmap
White Matter Analysis Pipeline (WMAP)